View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6089_low_9 (Length: 251)

Name: NF6089_low_9
Description: NF6089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6089_low_9
NF6089_low_9
[»] chr4 (7 HSPs)
chr4 (1-243)||(4684236-4684478)
chr4 (2-57)||(21157655-21157710)
chr4 (2-61)||(43932316-43932375)
chr4 (2-61)||(46053583-46053642)
chr4 (2-64)||(24193465-24193527)
chr4 (3-61)||(41162182-41162240)
chr4 (16-64)||(19429630-19429678)
[»] chr2 (6 HSPs)
chr2 (2-64)||(11393494-11393556)
chr2 (2-64)||(11410155-11410217)
chr2 (8-64)||(35459790-35459846)
chr2 (8-63)||(18884762-18884817)
chr2 (17-59)||(37474656-37474698)
chr2 (15-63)||(31740096-31740144)
[»] chr1 (6 HSPs)
chr1 (3-63)||(17631223-17631283)
chr1 (8-61)||(36602673-36602726)
chr1 (2-63)||(44375465-44375526)
chr1 (11-67)||(29794059-29794115)
chr1 (34-63)||(52468012-52468041)
chr1 (8-60)||(5090756-5090808)
[»] chr5 (2 HSPs)
chr5 (2-68)||(11790859-11790925)
chr5 (2-62)||(26516180-26516240)
[»] chr3 (4 HSPs)
chr3 (2-64)||(52324005-52324067)
chr3 (8-63)||(48933718-48933773)
chr3 (2-63)||(2081206-2081267)
chr3 (8-65)||(20874434-20874491)
[»] chr7 (2 HSPs)
chr7 (2-63)||(5630043-5630104)
chr7 (1-61)||(29363389-29363449)
[»] chr8 (4 HSPs)
chr8 (10-50)||(27161726-27161766)
chr8 (2-65)||(787234-787297)
chr8 (8-61)||(43907933-43907986)
chr8 (8-56)||(39392795-39392843)


Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 4684236 - 4684478
Alignment:
Q  1 aataagtacttatatgataaacacttatgatagaagtgcttaattaagctatttatccaaacaaatattttctccattaccaacacaaatatggacaatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4684236 aataagtacttatatgataaacacttatgatagaagtgcttaattaagctatttatccaaacaaatattttctccattaccaacacaaatatggacaatg 4684335  T
Q  101 ctaggccttataccaaaatgtaactacttgtaagtcacagcatgcttaccagtcattatagcatctcatacacaaagagtggtagcaattgggtaacaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4684336 ctaggccttataccaaaatgtaactacttgtaagtcacagcatgcttaccagtcattatagcatctcatacacaaagagtggtagcaattgggtaacaca 4684435  T
Q  201 accttgttgttcatttccatacaaatcgggcattcttcttctc 243  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  4684436 accttgttgttcatttccatacaaatcggacattcttcttctc 4684478  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 21157710 - 21157655
Alignment:
Q  2 ataagtacttatatgataaacacttatgatagaagtgcttaattaagctatttatc 57  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||||||| ||||||||    
T  21157710 ataagcacttatatgataaacacttctgatacaagtgcttaattaagttatttatc 21157655  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 43932375 - 43932316
Alignment:
Q  2 ataagtacttatatgataaacacttatgatagaagtgcttaattaagctatttatccaaa 61  Q
    ||||| |||| ||||||||||||||||| || |||||||||||||| || ||||||||||    
T  43932375 ataagcacttgtatgataaacacttatgttataagtgcttaattaatctgtttatccaaa 43932316  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 46053642 - 46053583
Alignment:
Q  2 ataagtacttatatgataaacacttatgatagaagtgcttaattaagctatttatccaaa 61  Q
    |||||||||||||||||||  ||| ||| || ||| ||||||||||||| ||||||||||    
T  46053642 ataagtacttatatgataagtactcatgctataagcgcttaattaagctgtttatccaaa 46053583  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 24193527 - 24193465
Alignment:
Q  2 ataagtacttatatgataaacacttatgatagaagtgcttaattaagctatttatccaaacaa 64  Q
    ||||||||||||||||||| |  ||||| || ||||||| ||||||| | |||||||||||||    
T  24193527 ataagtacttatatgataagcgtttatgctataagtgctcaattaagttgtttatccaaacaa 24193465  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 41162182 - 41162240
Alignment:
Q  3 taagtacttatatgataaacacttatgatagaagtgcttaattaagctatttatccaaa 61  Q
    |||| ||||| ||||||||| |||||| || ||||||||||||||| | ||||||||||    
T  41162182 taagaacttaaatgataaacgcttatgttataagtgcttaattaagttgtttatccaaa 41162240  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 19429630 - 19429678
Alignment:
Q  16 gataaacacttatgatagaagtgcttaattaagctatttatccaaacaa 64  Q
    ||||||| |||||| || |||||||||| ||||||||||||||| ||||    
T  19429630 gataaacgcttatgctataagtgcttaactaagctatttatccatacaa 19429678  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 11393494 - 11393556
Alignment:
Q  2 ataagtacttatatgataaacacttatgatagaagtgcttaattaagctatttatccaaacaa 64  Q
    ||||| ||||||||||||||||||| || || ||||||||||||||||| |||||||||||||    
T  11393494 ataagcacttatatgataaacacttgtgctataagtgcttaattaagctgtttatccaaacaa 11393556  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 11410155 - 11410217
Alignment:
Q  2 ataagtacttatatgataaacacttatgatagaagtgcttaattaagctatttatccaaacaa 64  Q
    ||||| ||||||||||||||||||| || || ||||||||||||||||| |||||||||||||    
T  11410155 ataagcacttatatgataaacacttgtgctataagtgcttaattaagctgtttatccaaacaa 11410217  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 35459846 - 35459790
Alignment:
Q  8 acttatatgataaacacttatgatagaagtgcttaattaagctatttatccaaacaa 64  Q
    |||||||||||||||||||||| || ||| ||| ||||||||||||||  |||||||    
T  35459846 acttatatgataaacacttatgctataagagctgaattaagctatttactcaaacaa 35459790  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 18884817 - 18884762
Alignment:
Q  8 acttatatgataaacacttatgatagaagtgcttaattaagctatttatccaaaca 63  Q
    |||||||||||||| ||| ||| || |||||||| |||||||| ||||||||||||    
T  18884817 acttatatgataaaaactaatgctataagtgcttgattaagctgtttatccaaaca 18884762  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 37474698 - 37474656
Alignment:
Q  17 ataaacacttatgatagaagtgcttaattaagctatttatcca 59  Q
    ||||||||||| | || ||||||||||||||||||||||||||    
T  37474698 ataaacacttaagctataagtgcttaattaagctatttatcca 37474656  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 31740096 - 31740144
Alignment:
Q  15 tgataaacacttatgatagaagtgcttaattaagctatttatccaaaca 63  Q
    |||||| |||||||  || ||||||||||||||||||||||| ||||||    
T  31740096 tgataagcacttatactaaaagtgcttaattaagctatttatacaaaca 31740144  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 17631223 - 17631283
Alignment:
Q  3 taagtacttatatgataaacacttatgatagaagtgcttaattaagctatttatccaaaca 63  Q
    |||| ||||||||||||| |||||||  ||  |||||||||||||||||||||||||||||    
T  17631223 taagcacttatatgataagcacttatagtattagtgcttaattaagctatttatccaaaca 17631283  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 36602726 - 36602673
Alignment:
Q  8 acttatatgataaacacttatgatagaagtgcttaattaagctatttatccaaa 61  Q
    |||||||||||||| | |||||||| |||||||||||||| ||||||| |||||    
T  36602726 acttatatgataaaaatttatgatataagtgcttaattaaactatttaaccaaa 36602673  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 44375465 - 44375526
Alignment:
Q  2 ataagtacttatatgataaacacttatgatagaagtgcttaattaagctatttatccaaaca 63  Q
    ||||| ||||||| |||||||||||| | || |||||||||||||| || ||||||||||||    
T  44375465 ataagaacttataagataaacacttaggttataagtgcttaattaaactgtttatccaaaca 44375526  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 29794059 - 29794115
Alignment:
Q  11 tatatgataaacacttatgatagaagtgcttaattaagctatttatccaaacaaata 67  Q
    ||||||| ||||||||||| || ||| ||||||||||||| |||||||||| |||||    
T  29794059 tatatgaaaaacacttatgctataagcgcttaattaagctgtttatccaaaaaaata 29794115  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 52468041 - 52468012
Alignment:
Q  34 aagtgcttaattaagctatttatccaaaca 63  Q
    ||||||||||||||||||||||||||||||    
T  52468041 aagtgcttaattaagctatttatccaaaca 52468012  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 5090808 - 5090756
Alignment:
Q  8 acttatatgataaacacttatgatagaagtgcttaattaagctatttatccaa 60  Q
    ||||| |||| |||| |||||| |  |||||||||||||||||||||||||||    
T  5090808 acttaaatgaaaaactcttatgctttaagtgcttaattaagctatttatccaa 5090756  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 11790925 - 11790859
Alignment:
Q  2 ataagtacttatatgataaacacttatgatagaagtgcttaattaagctatttatccaaacaaatat 68  Q
    ||||| |||||||||||||||||||||| || |||   |||||||||||||||| ||||||| ||||    
T  11790925 ataagcacttatatgataaacacttatgttacaagcagttaattaagctatttacccaaacatatat 11790859  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 26516240 - 26516180
Alignment:
Q  2 ataagtacttatatgataaacacttatgatagaagtgcttaattaagctatttatccaaac 62  Q
    ||||| ||||||||||||| | |||||| || ||| ||||||||||| | |||||||||||    
T  26516240 ataagcacttatatgataagcgcttatgctataagcgcttaattaagttgtttatccaaac 26516180  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 52324005 - 52324067
Alignment:
Q  2 ataagtacttatatgataaacacttatgatagaagtgcttaattaagctatttatccaaacaa 64  Q
    ||||||||||||||| |||||||||||| || |||  |||||||||| ||||||| |||||||    
T  52324005 ataagtacttatatgctaaacacttatgctataagcacttaattaagttatttatacaaacaa 52324067  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 48933718 - 48933773
Alignment:
Q  8 acttatatgataaacacttatgatagaagtgcttaattaagctatttatccaaaca 63  Q
    |||||||||||| ||||||||| || |||||||||||||| || ||||||| ||||    
T  48933718 acttatatgatagacacttatgttataagtgcttaattaatctgtttatccgaaca 48933773  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 2081206 - 2081267
Alignment:
Q  2 ataagtacttatatgataaacacttatgatagaagtgcttaattaagctatttatccaaaca 63  Q
    ||||| ||||||||||||| |  ||||| ||||||  |||||||||||||||||| ||||||    
T  2081206 ataagaacttatatgataagcgtttatgttagaagcacttaattaagctatttatacaaaca 2081267  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 20874434 - 20874491
Alignment:
Q  8 acttatatgataaacacttatgatagaagtgcttaattaagctatttatccaaacaaa 65  Q
    ||||||||||||  || ||||| || ||||||||||||||| | ||||||||||||||    
T  20874434 acttatatgatatgcatttatgctataagtgcttaattaagttgtttatccaaacaaa 20874491  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 5630043 - 5630104
Alignment:
Q  2 ataagtacttatatgataaacacttatgatagaagtgcttaattaagctatttatccaaaca 63  Q
    |||||||||||||||||||||||||||  || |||  |||||||||| | ||||||||||||    
T  5630043 ataagtacttatatgataaacacttattctataaggacttaattaagttgtttatccaaaca 5630104  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 29363449 - 29363389
Alignment:
Q  1 aataagtacttatatgataaacacttatgatagaagtgcttaattaagctatttatccaaa 61  Q
    |||||| ||| |||| |||||||||| || || ||| ||||||||||||| ||||||||||    
T  29363449 aataagcactaatataataaacacttgtgctataagggcttaattaagctgtttatccaaa 29363389  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 27161726 - 27161766
Alignment:
Q  10 ttatatgataaacacttatgatagaagtgcttaattaagct 50  Q
    ||||||||||||||||||||||| |||| ||||||||||||    
T  27161726 ttatatgataaacacttatgatataagttcttaattaagct 27161766  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 787234 - 787297
Alignment:
Q  2 ataagtacttatatgataaacacttatgatagaagtgcttaattaagctatttatccaaacaaa 65  Q
    ||||| ||||| |||||||||| ||||| || |||||||||||| || |||||||| |||||||    
T  787234 ataagcacttagatgataaacatttatgctataagtgcttaattgagttatttatcaaaacaaa 787297  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 43907933 - 43907986
Alignment:
Q  8 acttatatgataaacacttatgatagaagtgcttaattaagctatttatccaaa 61  Q
    |||||||||||||||| |||||||| ||| | ||||||||| | ||||||||||    
T  43907933 acttatatgataaacatttatgatataagggtttaattaagatgtttatccaaa 43907986  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 39392795 - 39392843
Alignment:
Q  8 acttatatgataaacacttatgatagaagtgcttaattaagctatttat 56  Q
    ||||||||||||| |||||||| || || |||||||||||| |||||||    
T  39392795 acttatatgataagcacttatgctataaatgcttaattaagttatttat 39392843  T

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