View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6090_high_1 (Length: 236)

Name: NF6090_high_1
Description: NF6090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6090_high_1
NF6090_high_1
[»] chr1 (21 HSPs)
chr1 (79-228)||(23223284-23223433)
chr1 (79-215)||(21451921-21452057)
chr1 (83-228)||(30675360-30675506)
chr1 (79-178)||(15299012-15299111)
chr1 (138-215)||(12424020-12424097)
chr1 (138-228)||(50047113-50047203)
chr1 (79-207)||(31313425-31313553)
chr1 (150-228)||(26657420-26657498)
chr1 (137-222)||(11770093-11770178)
chr1 (138-222)||(25730670-25730754)
chr1 (139-220)||(25777932-25778013)
chr1 (154-206)||(34935297-34935349)
chr1 (138-228)||(12810256-12810344)
chr1 (161-203)||(25266462-25266504)
chr1 (138-222)||(8247756-8247840)
chr1 (99-144)||(22624837-22624882)
chr1 (150-207)||(25965488-25965545)
chr1 (104-144)||(21914855-21914895)
chr1 (136-196)||(26101987-26102047)
chr1 (104-144)||(21912072-21912112)
chr1 (15-59)||(30675273-30675317)
[»] chr6 (11 HSPs)
chr6 (139-234)||(15576249-15576344)
chr6 (79-193)||(16527772-16527883)
chr6 (79-207)||(1755666-1755794)
chr6 (1-56)||(15576375-15576430)
chr6 (140-228)||(30355260-30355348)
chr6 (79-196)||(12972509-12972626)
chr6 (123-222)||(15574842-15574941)
chr6 (138-186)||(12974270-12974318)
chr6 (99-144)||(7837121-7837166)
chr6 (104-144)||(17695705-17695745)
chr6 (104-144)||(11126599-11126639)
[»] chr5 (20 HSPs)
chr5 (79-222)||(17027400-17027543)
chr5 (79-207)||(24841626-24841754)
chr5 (104-207)||(11274445-11274547)
chr5 (79-164)||(12029493-12029578)
chr5 (138-222)||(25594791-25594875)
chr5 (146-228)||(17382128-17382210)
chr5 (138-228)||(30072111-30072200)
chr5 (80-216)||(22754829-22754958)
chr5 (137-212)||(22967951-22968026)
chr5 (162-228)||(24517310-24517376)
chr5 (146-228)||(12340107-12340187)
chr5 (138-215)||(22229741-22229818)
chr5 (79-196)||(22643989-22644105)
chr5 (104-144)||(20860430-20860470)
chr5 (104-144)||(34133866-34133906)
chr5 (84-131)||(11274548-11274595)
chr5 (137-207)||(24846192-24846262)
chr5 (138-214)||(15205577-15205653)
chr5 (104-144)||(22938049-22938089)
chr5 (135-207)||(26070404-26070475)
[»] chr2 (19 HSPs)
chr2 (79-222)||(28278522-28278664)
chr2 (137-228)||(21505232-21505323)
chr2 (83-207)||(39730324-39730448)
chr2 (79-204)||(31449830-31449955)
chr2 (82-196)||(32276638-32276752)
chr2 (150-207)||(32619586-32619643)
chr2 (138-228)||(35707735-35707825)
chr2 (138-205)||(18236418-18236485)
chr2 (138-228)||(25473969-25474059)
chr2 (127-177)||(29769610-29769660)
chr2 (147-228)||(1733042-1733122)
chr2 (79-176)||(27918127-27918224)
chr2 (79-143)||(22388934-22388997)
chr2 (104-144)||(1504312-1504352)
chr2 (104-144)||(20379377-20379417)
chr2 (104-144)||(25873169-25873209)
chr2 (104-144)||(25886157-25886197)
chr2 (155-207)||(31914047-31914099)
chr2 (104-144)||(45456266-45456306)
[»] chr4 (16 HSPs)
chr4 (79-213)||(1676403-1676537)
chr4 (79-213)||(1682931-1683065)
chr4 (79-215)||(1696675-1696809)
chr4 (140-215)||(15192137-15192212)
chr4 (79-166)||(34850752-34850839)
chr4 (154-228)||(34864384-34864458)
chr4 (141-205)||(12111446-12111510)
chr4 (136-207)||(18897921-18897992)
chr4 (137-222)||(5906819-5906905)
chr4 (124-190)||(10576371-10576437)
chr4 (138-200)||(9288142-9288204)
chr4 (159-222)||(25050164-25050227)
chr4 (138-228)||(25315324-25315414)
chr4 (146-190)||(10320350-10320394)
chr4 (139-207)||(17339927-17339995)
chr4 (104-144)||(19826667-19826707)
[»] chr3 (20 HSPs)
chr3 (80-228)||(21017750-21017899)
chr3 (79-204)||(13911138-13911263)
chr3 (138-221)||(25919564-25919647)
chr3 (79-178)||(8402693-8402792)
chr3 (138-228)||(17637035-17637125)
chr3 (79-143)||(5632668-5632732)
chr3 (105-156)||(11521039-11521090)
chr3 (147-221)||(12573231-12573305)
chr3 (147-221)||(13549695-13549769)
chr3 (169-228)||(33914655-33914714)
chr3 (142-207)||(16970177-16970241)
chr3 (138-215)||(19219317-19219394)
chr3 (104-144)||(10883984-10884024)
chr3 (138-205)||(18065761-18065828)
chr3 (138-227)||(1475374-1475463)
chr3 (141-207)||(31477705-31477771)
chr3 (104-144)||(16223572-16223612)
chr3 (104-144)||(18541774-18541814)
chr3 (104-144)||(31283869-31283909)
chr3 (104-144)||(47053927-47053967)
[»] chr7 (30 HSPs)
chr7 (79-215)||(7494584-7494720)
chr7 (83-228)||(20470903-20471049)
chr7 (83-222)||(21471674-21471813)
chr7 (138-228)||(29544451-29544541)
chr7 (79-190)||(9761537-9761646)
chr7 (83-180)||(3269123-3269220)
chr7 (138-207)||(7142030-7142099)
chr7 (138-234)||(2632523-2632619)
chr7 (128-190)||(9801996-9802057)
chr7 (140-204)||(2353357-2353421)
chr7 (83-206)||(16536689-16536811)
chr7 (79-206)||(16577387-16577513)
chr7 (79-206)||(16588149-16588275)
chr7 (83-206)||(16628851-16628973)
chr7 (138-228)||(20446171-20446261)
chr7 (79-161)||(1074341-1074422)
chr7 (138-228)||(23124833-23124922)
chr7 (79-140)||(7956058-7956119)
chr7 (139-196)||(18496498-18496555)
chr7 (138-190)||(21545929-21545984)
chr7 (104-144)||(13287676-13287716)
chr7 (104-144)||(26137034-26137074)
chr7 (150-215)||(7815267-7815332)
chr7 (134-180)||(22532784-22532830)
chr7 (104-144)||(2506786-2506826)
chr7 (104-144)||(4596918-4596958)
chr7 (104-144)||(15170730-15170770)
chr7 (104-144)||(19154909-19154949)
chr7 (104-144)||(20754308-20754348)
chr7 (104-144)||(39270239-39270279)
[»] chr8 (23 HSPs)
chr8 (82-228)||(24120107-24120253)
chr8 (79-228)||(16052370-16052519)
chr8 (87-207)||(22894648-22894768)
chr8 (131-221)||(28252481-28252571)
chr8 (79-228)||(28901433-28901582)
chr8 (79-228)||(10866861-10867010)
chr8 (121-228)||(13082030-13082137)
chr8 (83-164)||(5570305-5570386)
chr8 (148-228)||(12956431-12956511)
chr8 (148-228)||(14977200-14977280)
chr8 (83-166)||(28973490-28973573)
chr8 (146-207)||(11310318-11310379)
chr8 (105-190)||(29291670-29291755)
chr8 (137-228)||(16054225-16054316)
chr8 (138-228)||(32239219-32239309)
chr8 (137-228)||(6358629-6358720)
chr8 (138-228)||(29047409-29047499)
chr8 (136-190)||(30851230-30851284)
chr8 (99-144)||(26829427-26829472)
chr8 (104-144)||(25180687-25180727)
chr8 (104-144)||(29765357-29765397)
chr8 (154-206)||(30543711-30543763)
chr8 (104-144)||(33878232-33878272)
[»] scaffold0282 (1 HSPs)
scaffold0282 (83-205)||(22661-22783)
[»] scaffold1026 (1 HSPs)
scaffold1026 (81-200)||(1952-2071)
[»] scaffold0171 (2 HSPs)
scaffold0171 (138-215)||(6128-6205)
scaffold0171 (145-207)||(21336-21398)
[»] scaffold0386 (2 HSPs)
scaffold0386 (138-214)||(8816-8892)
scaffold0386 (153-222)||(13170-13239)
[»] scaffold0002 (1 HSPs)
scaffold0002 (138-215)||(446937-447014)
[»] scaffold0188 (1 HSPs)
scaffold0188 (147-207)||(27068-27128)
[»] scaffold0048 (2 HSPs)
scaffold0048 (104-144)||(24001-24041)
scaffold0048 (104-144)||(28239-28279)
[»] scaffold0210 (1 HSPs)
scaffold0210 (79-141)||(25216-25278)
[»] scaffold0084 (1 HSPs)
scaffold0084 (104-145)||(28544-28585)
[»] scaffold0321 (1 HSPs)
scaffold0321 (104-144)||(3841-3881)
[»] scaffold0270 (1 HSPs)
scaffold0270 (104-144)||(1054-1094)
[»] scaffold0198 (1 HSPs)
scaffold0198 (99-143)||(3979-4023)
[»] scaffold0072 (1 HSPs)
scaffold0072 (104-144)||(38382-38422)


Alignment Details
Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 79 - 228
Target Start/End: Original strand, 23223284 - 23223433
Alignment:
Q  79 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 178  Q
    ||||||||||||| |||||||||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |    
T  23223284 attctaacttctttctattgtgttgcttaaggacaagaaacaatttaagtttggggttgtgatgacggagcatcatatgatgtttttggctatgttttaa 23223383  T
Q  179 gtacttttctttgaatttaaagacaaataggatgagaattagagtagttg 228  Q
    ||||||||||||| ||||  |||||| || |||| || |||||| |||||    
T  23223384 gtacttttctttgcattttgagacaattaagatgggagttagaggagttg 23223433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 79 - 215
Target Start/End: Complemental strand, 21452057 - 21451921
Alignment:
Q  79 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 178  Q
    ||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||  |||||||||||| | |||||| ||||||||||    
T  21452057 attctaacttcttgctattgtgtttcttgaggacaagtaatagtttaagtttggggttgtgatgacatagcatcatatgaca-ttttggctatgttttta 21451959  T
Q  179 gtac-ttttctttgaatttaaagacaaataggatgaga 215  Q
    |||| ||||||||| |||| |||||||||| |||||||    
T  21451958 gtacgttttctttgcatttgaagacaaataagatgaga 21451921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 83 - 228
Target Start/End: Original strand, 30675360 - 30675506
Alignment:
Q  83 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtac 182  Q
    |||||||||||||| || || |||||||||||| ||| ||||||||| || ||||||||||| ||||||||||||| |||||| | ||||||||||| ||    
T  30675360 taacttcttgctatagttttgcttgaggacaagcaactgtttaagttcggtgttgtgatgacagagcatcatatgacattttttgctatgtttttagaac 30675459  T
Q  183 ttttc-tttgaatttaaagacaaataggatgagaattagagtagttg 228  Q
    ||||| |||  ||||  ||||||||| ||||| |||||||| |||||    
T  30675460 ttttctttttcatttgtagacaaataagatgaaaattagaggagttg 30675506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 79 - 178
Target Start/End: Complemental strand, 15299111 - 15299012
Alignment:
Q  79 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 178  Q
    ||||||||||||||||||| | || |||||||| ||  |||| ||||| |||| | ||||||||| ||| |||||||||||||||| |||||||||||||    
T  15299111 attctaacttcttgctatttttttgcttgaggagaatcaacgatttaaatttgcgattgtgatgatggaacatcatatgatattttaggttatgttttta 15299012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 12424097 - 12424020
Alignment:
Q  138 tgatgacggagcatcatatgatatttttggttatgtttttagtac-ttttctttgaatttaaagacaaataggatgaga 215  Q
    ||||||| ||||||||||||||| |||||| |||||||||||||| ||||||||| |||| |||||||||| |||||||    
T  12424097 tgatgacagagcatcatatgata-ttttggctatgtttttagtactttttctttgcatttgaagacaaataagatgaga 12424020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 50047113 - 50047203
Alignment:
Q  138 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttg 228  Q
    ||||||||||  | |||||||||||||||| |||||||||  |||||||||||| |||| |||||||||| ||||| || ||||| |||||    
T  50047113 tgatgacggaataccatatgatatttttggctatgtttttgatacttttctttgcatttgaagacaaataagatgaaaagtagaggagttg 50047203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 207
Target Start/End: Original strand, 31313425 - 31313553
Alignment:
Q  79 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttt-tt 177  Q
    ||||||| ||||||||||| |||| | |||||||||| ||| |||||||||||||||||||| || ||  |||||||||||| ||| ||  |||||| ||    
T  31313425 attctaatttcttgctattttgttgcctgaggacaagcaacagtttaagtttggggttgtgacgatgg-tcatcatatgataatttaggccatgtttctt 31313523  T
Q  178 agtacttttctttgaatttaaagacaaata 207  Q
    |||  ||||||||| |||| ||| ||||||    
T  31313524 agttattttctttgcatttgaaggcaaata 31313553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 26657420 - 26657498
Alignment:
Q  150 atcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttg 228  Q
    |||||||||||||||||  |||||||||| |||||||||||| |||| |||||||||| | |||||  ||||| |||||    
T  26657420 atcatatgatatttttgactatgtttttattacttttctttgcatttgaagacaaatatgttgagagatagaggagttg 26657498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 222
Target Start/End: Complemental strand, 11770178 - 11770093
Alignment:
Q  137 gtgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagag 222  Q
    |||||||  |||||||| ||||||||||||  |||||||||| |||| ||||||| |||| |||| ||||| ||||||| ||||||    
T  11770178 gtgatgatagagcatcacatgatatttttgtctatgtttttaatactattctttgcatttgaagataaataagatgagagttagag 11770093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 25730754 - 25730670
Alignment:
Q  138 tgatgacggagcatcatatgatatttttg-gttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagag 222  Q
    ||||||| ||||||||||||||||||||  | |||||||| |||||||||||||| |||| || ||||||| ||||||| ||||||    
T  25730754 tgatgacagagcatcatatgatatttttttgctatgtttt-agtacttttctttgcatttgaaaacaaataagatgagagttagag 25730670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 25778013 - 25777932
Alignment:
Q  139 gatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattag 220  Q
    |||||||||| |||||||||||||||| | |||||| ||||| |||||||||| |||| || | ||||| ||||||| ||||    
T  25778013 gatgacggagtatcatatgatattttttgctatgttcttagtgcttttctttgcatttgaaaataaataagatgagagttag 25777932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 34935349 - 34935297
Alignment:
Q  154 tatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaat 206  Q
    ||||||||||| || ||||||||||||  ||||||||||||||||||||||||    
T  34935349 tatgatattttaggctatgtttttagttattttctttgaatttaaagacaaat 34935297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 12810256 - 12810344
Alignment:
Q  138 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttg 228  Q
    |||||||| ||||||||  |||||||||   ||||||||||||||||||||||  ||||||||||||||| | |||||  ||||| |||||    
T  12810256 tgatgacgaagcatcat--gatattttttactatgtttttagtacttttctttatatttaaagacaaataagttgagagatagaggagttg 12810344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 25266504 - 25266462
Alignment:
Q  161 tttttggttatgtttttagtacttttctttgaatttaaagaca 203  Q
    ||||||||||||||||||||||||||||||| |||| ||||||    
T  25266504 tttttggttatgtttttagtacttttctttgcatttgaagaca 25266462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 8247840 - 8247756
Alignment:
Q  138 tgatgacggagcatcatatgatatttttggttatgtttttagta-cttttctttgaatttaaagacaaataggatgagaattagag 222  Q
    ||||||| ||||||||||||| | |||||  |||||||||| || |||||||||| |||| |||||||||| ||||||| ||||||    
T  8247840 tgatgacagagcatcatatgaca-ttttgactatgtttttaataccttttctttgcatttgaagacaaataagatgagagttagag 8247756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 22624837 - 22624882
Alignment:
Q  99 tgtttcttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||| |||||||||||| ||| ||||||||||||||||||||||||    
T  22624837 tgttacttgaggacaagcaaccgtttaagtttggggttgtgatgac 22624882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 25965545 - 25965488
Alignment:
Q  150 atcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 207  Q
    |||||||||| |||| |||||||||||||||  ||||||||| | |||||||||||||    
T  25965545 atcatatgatgttttaggttatgtttttagttattttctttgtacttaaagacaaata 25965488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 21914895 - 21914855
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||||||||||| ||||||| ||||||||||||||||||||    
T  21914895 cttgaggacaagtaacggttcaagtttggggttgtgatgac 21914855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 26101987 - 26102047
Alignment:
Q  136 tgtgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaattt 196  Q
    |||||||| |||||||||||||||||||| ||  |||||||||||  ||||||||| ||||    
T  26101987 tgtgatgatggagcatcatatgatattttaggcgatgtttttagttattttctttgcattt 26102047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 21912112 - 21912072
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||||||||||  ||||||| ||||||||||||||||||||    
T  21912112 cttgaggacaaataacggttcaagtttggggttgtgatgac 21912072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 30675273 - 30675317
Alignment:
Q  15 tagttacgtctgatggtgggatgagtgacaatctgagcaaaatct 59  Q
    |||||| || ||||||||||| || ||||||||||||||||||||    
T  30675273 tagttaagtttgatggtgggaagaatgacaatctgagcaaaatct 30675317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 139 - 234
Target Start/End: Complemental strand, 15576344 - 15576249
Alignment:
Q  139 gatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgatgatg 234  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  15576344 gatgatggagcatcatatgatatttttggctatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagaggagttgttgatg 15576249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 79 - 193
Target Start/End: Original strand, 16527772 - 16527883
Alignment:
Q  79 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 178  Q
    |||||||| |||||||||   ||| |||||||||||||| |||||||||||||||||||||||| | ||||||||||| |||||||||| ||||||||||    
T  16527772 attctaacgtcttgctat---gttgcttgaggacaagaaccggtttaagtttggggttgtgatggcagagcatcatataatatttttggctatgttttta 16527868  T
Q  179 gtacttttctttgaa 193  Q
    |||||||||||||||    
T  16527869 gtacttttctttgaa 16527883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 79 - 207
Target Start/End: Complemental strand, 1755794 - 1755666
Alignment:
Q  79 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 178  Q
    |||||||||||| || ||| |||| || ||||||| | ||  ||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||    
T  1755794 attctaacttctcgcaattttgttgctagaggacaggtaatagtttaagtttggggttgtgatgacggagcatcatatgatatatcaggttatgttttta 1755695  T
Q  179 gtacttttctttgaatttaaagacaaata 207  Q
    ||  |||||||||||||| ||||||||||    
T  1755694 gttattttctttgaatttgaagacaaata 1755666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 15576430 - 15576375
Alignment:
Q  1 tggaaatggtaatatagttacgtctgatggtgggatgagtgacaatctgagcaaaa 56  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15576430 tggaaatggtaatatagttacgtctgacggtgggatgagtgacaatctgagcaaaa 15576375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 30355260 - 30355348
Alignment:
Q  140 atgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttg 228  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||  ||| |||| |||  ||||| ||||||| |||||| |||||    
T  30355260 atgacggagcatcatatgatatttttggctatgtttttagtacttttacttgcatttgaaggtaaataagatgagagttagagaagttg 30355348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 196
Target Start/End: Complemental strand, 12972626 - 12972509
Alignment:
Q  79 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 178  Q
    |||||||||| |||||||| || | ||| || | ||| |||  |||||||||||||| |||||||  || |||||| |||||||||||| ||||||||||    
T  12972626 attctaacttgttgctattttggtgctttagaagaagcaacaatttaagtttggggtagtgatgatagaacatcatttgatatttttggctatgttttta 12972527  T
Q  179 gtacttttctttgaattt 196  Q
    ||  ||||||||| ||||    
T  12972526 gttattttctttgcattt 12972509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 15574842 - 15574941
Alignment:
Q  123 ttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattaga 221  Q
    |||||||||||||| ||||||| || |||||||||| | |||||| ||| || ||||||| ||||||||| |||| |||||||||| ||||||| |||||    
T  15574842 ttaagtttggggttatgatgacagaacatcatatgaca-ttttggctatcttgttagtactttttctttgcatttgaagacaaataagatgagatttaga 15574940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 12974270 - 12974318
Alignment:
Q  138 tgatgacggagcatcatatgatatttttggttatgtttttagtactttt 186  Q
    |||||||||||||||||||||||||||| | |||| |||||||||||||    
T  12974270 tgatgacggagcatcatatgatattttttgctatggttttagtactttt 12974318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 7837121 - 7837166
Alignment:
Q  99 tgtttcttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    ||||||||||||||||| ||| ||||||||||| ||||||||||||    
T  7837121 tgtttcttgaggacaagtaacagtttaagtttgaggttgtgatgac 7837166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 17695705 - 17695745
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||||||||||| || |||||||||||||||||||||||||    
T  17695705 cttgaggacaaggaatggtttaagtttggggttgtgatgac 17695745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 11126639 - 11126599
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    ||||||||| ||||| |||| ||||||||||||||||||||    
T  11126639 cttgaggactagaaatggttcaagtttggggttgtgatgac 11126599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 79 - 222
Target Start/End: Original strand, 17027400 - 17027543
Alignment:
Q  79 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 178  Q
    |||||||||| |||||| |||||| |||||||| ||| || |  |||||||||||||||||| || |||||||||||||| |||||||| ||||||||||    
T  17027400 attctaactttttgctaatgtgttgcttgaggataagcaatgacttaagtttggggttgtgacgagggagcatcatatgacatttttggctatgttttta 17027499  T
Q  179 gtacttttctttgaatttaaagacaaataggatgagaattagag 222  Q
    ||||||||||||| |||||||||||| || ||||||| ||||||    
T  17027500 gtacttttctttgcatttaaagacaattaagatgagagttagag 17027543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 79 - 207
Target Start/End: Original strand, 24841626 - 24841754
Alignment:
Q  79 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 178  Q
    |||||||||||||| |||||||||||||||||||||| ||| || || || ||||||||||||||| ||||||||||||| |||||| | ||||||||||    
T  24841626 attctaacttcttgttattgtgtttcttgaggacaagcaacagtgtacgtatggggttgtgatgacagagcatcatatgacattttttgctatgttttta 24841725  T
Q  179 gtacttttctttgaatttaaagacaaata 207  Q
    ||||| ||||||| |||| ||||||||||    
T  24841726 gtactattctttgcatttgaagacaaata 24841754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 104 - 207
Target Start/End: Complemental strand, 11274547 - 11274445
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagaca 203  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||| | ||| ||||||||||||||||||| ||||||||||     
T  11274547 cttgaggacaagcaacggtttaagtttggggttgtgatgaaggagcatcatttgatattttttgctat-tttttagtacttttctttgcatttaaagacc 11274449  T
Q  204 aata 207  Q
    ||||    
T  11274448 aata 11274445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 79 - 164
Target Start/End: Original strand, 12029493 - 12029578
Alignment:
Q  79 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttt 164  Q
    ||||| ||||||| ||||| |||| ||||||||||| |||   ||||||||||||||||||||||| |||||||||||||||||||    
T  12029493 attcttacttctttctattttgttacttgaggacaaaaaatattttaagtttggggttgtgatgaccgagcatcatatgatatttt 12029578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 25594875 - 25594791
Alignment:
Q  138 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagag 222  Q
    ||||||| |||||||||||  ||||||||| |||||||||||||||||| |||| |||| |||||||||| ||||||| ||||||    
T  25594875 tgatgacagagcatcatatattatttttggctatgtttttagtacttttatttgcatttgaagacaaataagatgagagttagag 25594791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 146 - 228
Target Start/End: Complemental strand, 17382210 - 17382128
Alignment:
Q  146 gagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttg 228  Q
    |||||||||||||||||||| | ||||| |||||||||||| |||| |||| |||||||||| ||||||| |||||| |||||    
T  17382210 gagcatcatatgatattttttgctatgtgtttagtacttttttttgcatttgaagacaaataagatgagagttagaggagttg 17382128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 30072111 - 30072200
Alignment:
Q  138 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttg 228  Q
    |||||||||| |||||| || |||||| || |||||||| |||||||||||||| |||| |||||||||| |||||||||||||| |||||    
T  30072111 tgatgacggaacatcatgtgttatttt-ggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattagaggagttg 30072200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 216
Target Start/End: Original strand, 22754829 - 22754958
Alignment:
Q  80 ttctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttag 179  Q
    ||||||||| ||||||||||||| |||| |||||||||||  |||||||||||| || | ||||  |||      |||| ||||| || |||||||||||    
T  22754829 ttctaactttttgctattgtgttgcttgtggacaagaaacattttaagtttgggtttcttatgatagag------atgacatttt-ggatatgtttttag 22754921  T
Q  180 tacttttctttgaatttaaagacaaataggatgagaa 216  Q
    ||| |||||||| ||||||||||||||| ||||||||    
T  22754922 tacgtttctttgcatttaaagacaaataagatgagaa 22754958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 22968026 - 22967951
Alignment:
Q  137 gtgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatg 212  Q
    |||||||||||| ||||||||||||||| || ||||||||||||| ||||||||| || | |||||||||| ||||    
T  22968026 gtgatgacggagtatcatatgatattttaggctatgtttttagtagttttctttgcatgttaagacaaataagatg 22967951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 24517310 - 24517376
Alignment:
Q  162 ttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttg 228  Q
    |||| |||||||||||||| |||| ||||| |||| |||||||||| |||||||||||||| |||||    
T  24517310 ttttagttatgtttttagttctttgctttgcatttgaagacaaataagatgagaattagaggagttg 24517376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 228
Target Start/End: Complemental strand, 12340187 - 12340107
Alignment:
Q  146 gagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttg 228  Q
    ||||||||||||| ||||| || ||||||||||||| ||||||||| |||| |||||||||| | ||||| |||||| |||||    
T  12340187 gagcatcatatgacatttt-ggctatgtttttagta-ttttctttgcatttgaagacaaataaggtgagagttagaggagttg 12340107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 22229741 - 22229818
Alignment:
Q  138 tgatgacggagcatcatatgatatttttggttatgtttt-tagtacttttctttgaatttaaagacaaataggatgaga 215  Q
    ||||||| ||||||||||||  ||||| || |||||||| ||||||||||||||| |||| |||||||||| |||||||    
T  22229741 tgatgacagagcatcatatgtcatttt-ggctatgttttttagtacttttctttgcatttgaagacaaataagatgaga 22229818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 196
Target Start/End: Complemental strand, 22644105 - 22643989
Alignment:
Q  79 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 178  Q
    |||| |||||||||| ||| |||| |||||||| ||| |||||||||||||| || |||||||||  ||  | ||||| |||||||| | ||| ||||||    
T  22644105 attccaacttcttgccattttgttgcttgaggataagcaacggtttaagttt-ggtttgtgatgattgaataacatataatatttttaggtatattttta 22644007  T
Q  179 gtacttttctttgaattt 196  Q
    ||  ||||||||| ||||    
T  22644006 gttattttctttgtattt 22643989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 20860470 - 20860430
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||||||||||| ||| ||||||||||||||||||||||||    
T  20860470 cttgaggacaagcaacagtttaagtttggggttgtgatgac 20860430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 34133906 - 34133866
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||||||||||| ||||||| ||||||||||||||||||||    
T  34133906 cttgaggacaaggaacggttcaagtttggggttgtgatgac 34133866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 131
Target Start/End: Complemental strand, 11274595 - 11274548
Alignment:
Q  84 aacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttg 131  Q
    |||||||||||| |||||| |||||||||||| ||| |||||||||||    
T  11274595 aacttcttgctactgtgttgcttgaggacaagtaacagtttaagtttg 11274548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 24846192 - 24846262
Alignment:
Q  137 gtgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 207  Q
    ||||||||||||||| ||||||| |||| || ||| ||||||||   |||||||| |||| ||||||||||    
T  24846192 gtgatgacggagcatgatatgatgttttaggctatatttttagttactttctttgcatttgaagacaaata 24846262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 15205577 - 15205653
Alignment:
Q  138 tgatgacggagcatcatatgatatttttggttatgtttttagta-cttttctttgaatttaaagacaaataggatgag 214  Q
    ||||||| ||||||||||||||| |||||  |||||||||||||  |||| |||| ||||||| ||||||| ||||||    
T  15205577 tgatgacagagcatcatatgata-ttttgactatgtttttagtattttttatttgcatttaaatacaaataagatgag 15205653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 22938089 - 22938049
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  22938089 cttgaggacaaggaatggttcaagtttggggttgtgatgac 22938049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 26070404 - 26070475
Alignment:
Q  135 ttgtgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 207  Q
    |||| |||| ||| ||||||||||| ||||||| ||||||||||||  ||||||||| |||| ||| ||||||    
T  26070404 ttgtaatgatggaacatcatatgat-tttttggctatgtttttagttattttctttgcattttaaggcaaata 26070475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 79 - 222
Target Start/End: Complemental strand, 28278664 - 28278522
Alignment:
Q  79 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 178  Q
    |||||||||||||||||||||||| |||||||||||| |||  ||||||||| ||||||||||||| |||||||||||||||||||| | |||| |||||    
T  28278664 attctaacttcttgctattgtgttgcttgaggacaagcaacactttaagttttgggttgtgatgacagagcatcatatgatattttttgctatg-tttta 28278566  T
Q  179 gtacttttctttgaatttaaagacaaataggatgagaattagag 222  Q
    ||||||||||||| |||| ||| |||||| || |||| ||||||    
T  28278565 gtacttttctttgcatttgaaggcaaataagaagagagttagag 28278522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 137 - 228
Target Start/End: Complemental strand, 21505323 - 21505232
Alignment:
Q  137 gtgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttg 228  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||| |||||||||| ||||||| ||||||||||||    
T  21505323 gtgatgacggagcatcatatgatatttttggctatgtttttagtatttttctttgcatttgaagacaaataagatgagagttagagtagttg 21505232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 83 - 207
Target Start/End: Original strand, 39730324 - 39730448
Alignment:
Q  83 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtac 182  Q
    ||||||||||||||| |||| |||||||||||  |||  ||||||||||||||||||||| ||||||||||||| ||||||| || ||||||||||||      
T  39730324 taacttcttgctattttgttgcttgaggacaaataacattttaagtttggggttgtgatggcggagcatcatataatattttaggctatgtttttagtta 39730423  T
Q  183 ttttctttgaatttaaagacaaata 207  Q
    ||||||||  | || ||||||||||    
T  39730424 ttttctttataattgaagacaaata 39730448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 204
Target Start/End: Original strand, 31449830 - 31449955
Alignment:
Q  79 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 178  Q
    ||||| ||||||||||| | |||| |||||||||||| ||| ||||||||||||||||||||||| |||| ||| |||||||||||  | ||||||||||    
T  31449830 attctgacttcttgctaatttgttacttgaggacaagcaacagtttaagtttggggttgtgatgatggagtatcttatgatattttaagctatgttttta 31449929  T
Q  179 gtacttttctttgaatttaaagacaa 204  Q
    ||  |||| |||| |||| |||||||    
T  31449930 gttattttatttgcatttgaagacaa 31449955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 82 - 196
Target Start/End: Complemental strand, 32276752 - 32276638
Alignment:
Q  82 ctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagta 181  Q
    |||| |||||| |||| |||| | | |||||||||||| ||||||||||||||||||||||| ||| ||||||||| || |||||| ||||||||||||     
T  32276752 ctaagttcttgttattttgttgcgtaaggacaagaaaccgtttaagtttggggttgtgatgaaggaacatcatatggtacttttggatatgtttttagtt 32276653  T
Q  182 cttttctttgaattt 196  Q
     ||||||||| ||||    
T  32276652 attttctttgcattt 32276638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 32619586 - 32619643
Alignment:
Q  150 atcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 207  Q
    |||||||||||||||||| ||| ||||||||||||||||||| |||| ||||||||||    
T  32619586 atcatatgatatttttggctatatttttagtacttttctttgcatttgaagacaaata 32619643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 35707735 - 35707825
Alignment:
Q  138 tgatgacggagcatcatatgatatttttggttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattagagtagttg 228  Q
    ||||||| ||||||||||||| | |||||  |||||||||||||| ||||||||| |||| |||||||||| ||||||| |||||| |||||    
T  35707735 tgatgacagagcatcatatgaca-ttttgactatgtttttagtactttttctttgtatttgaagacaaataagatgagagttagagaagttg 35707825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 18236485 - 18236418
Alignment:
Q  138 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaa 205  Q
    |||||||||||||||||||||||||||  | ||||||||||||  ||||||||| |||| ||| ||||    
T  18236485 tgatgacggagcatcatatgatattttatgctatgtttttagttattttctttgcatttgaaggcaaa 18236418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 25473969 - 25474059
Alignment:
Q  138 tgatgacggagcatcatatgatatttttggttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattagagtagttg 228  Q
    ||||||| ||||||||||||| | |||||| |||||||||||||| |||| |||  |||| |||||||||| ||||||| |||||| |||||    
T  25473969 tgatgacagagcatcatatgaca-ttttggctatgtttttagtacattttattttcatttgaagacaaataagatgagagttagaggagttg 25474059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 177
Target Start/End: Original strand, 29769610 - 29769660
Alignment:
Q  127 gtttggggttgtgatgacggagcatcatatgatatttttggttatgttttt 177  Q
    |||||||||| ||||||||||||||||||| ||||||| || |||||||||    
T  29769610 gtttggggttatgatgacggagcatcatataatattttaggctatgttttt 29769660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 228
Target Start/End: Original strand, 1733042 - 1733122
Alignment:
Q  147 agcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttg 228  Q
    |||||||||||| ||||| | ||||||||||||||||||| |||  |||| |||||||||  ||||||| |||||| |||||    
T  1733042 agcatcatatgacattttag-ttatgtttttagtactttttttttcatttgaagacaaatgagatgagagttagaggagttg 1733122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 176
Target Start/End: Complemental strand, 27918224 - 27918127
Alignment:
Q  79 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttt 176  Q
    ||||||||||||| ||| ||| ||  |||| |||||| |||  ||||||||||||| |||||||| |||  | |||||||||||||| | ||||||||    
T  27918224 attctaacttcttactaatgttttgtttgatgacaagcaacaatttaagtttggggatgtgatgatggaataacatatgatatttttagctatgtttt 27918127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 22388997 - 22388934
Alignment:
Q  79 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatga 143  Q
    ||||||||||||||||||| | |||||||| |||||| |||| | ||||||||||||||| ||||    
T  22388997 attctaacttcttgctatttt-tttcttgatgacaagcaacgatataagtttggggttgtaatga 22388934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 1504352 - 1504312
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  1504352 cttgaggacaaggaatggttcaagtttggggttgtgatgac 1504312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 20379417 - 20379377
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||||||||||| ||| || |||||||||||||||||||||    
T  20379417 cttgaggacaagcaacagtctaagtttggggttgtgatgac 20379377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 25873169 - 25873209
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  25873169 cttgaggacaaggaatggttcaagtttggggttgtgatgac 25873209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 25886157 - 25886197
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||||||||||| |||  |||||||||||||||||||||||    
T  25886157 cttgaggacaagcaacaatttaagtttggggttgtgatgac 25886197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 31914099 - 31914047
Alignment:
Q  155 atgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 207  Q
    |||| |||||| | ||||||||||||| ||||||||| |||| ||||||||||    
T  31914099 atgacattttttgctatgtttttagtatttttctttgcatttgaagacaaata 31914047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 45456266 - 45456306
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  45456266 cttgaggacaaggaatggttcaagtttggggttgtgatgac 45456306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 79 - 213
Target Start/End: Complemental strand, 1676537 - 1676403
Alignment:
Q  79 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 178  Q
    ||||||||||||||||| |||||| ||||| |||| | ||| ||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||     
T  1676537 attctaacttcttgctactgtgttgcttgaagacatgcaacagtttaagtttggggttgtgatgacgaagcatcatatgacatttttggttatatttttt 1676438  T
Q  179 gtacttttctttgaatttaaagacaaataggatga 213  Q
    ||||||||||||  |||| |||||||||| |||||    
T  1676437 gtacttttctttacatttgaagacaaataagatga 1676403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 79 - 213
Target Start/End: Complemental strand, 1683065 - 1682931
Alignment:
Q  79 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 178  Q
    ||||||||||||||||| |||||| ||||| |||| | ||| ||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||     
T  1683065 attctaacttcttgctactgtgttgcttgaagacatgcaacagtttaagtttggggttgtgatgacgaagcatcatatgacatttttggttatatttttt 1682966  T
Q  179 gtacttttctttgaatttaaagacaaataggatga 213  Q
    ||||||||||||  |||| |||||||||| |||||    
T  1682965 gtacttttctttacatttgaagacaaataagatga 1682931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 79 - 215
Target Start/End: Complemental strand, 1696809 - 1696675
Alignment:
Q  79 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 178  Q
    ||||||||||||||||| |||||| ||||| || ||| ||| ||||||||||| |||||||||||   |||||||||||| |||||||| ||  | ||||    
T  1696809 attctaacttcttgctactgtgttgcttgaagataagcaacagtttaagtttgaggttgtgatgataaagcatcatatgacatttttggcta--tattta 1696712  T
Q  179 gtacttttctttgaatttaaagacaaataggatgaga 215  Q
    |||||||| |||  |||| |||||||||| |||||||    
T  1696711 gtacttttatttacatttgaagacaaataagatgaga 1696675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 15192137 - 15192212
Alignment:
Q  140 atgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgaga 215  Q
    ||||| ||||||||||||| |||||| ||||||||||| ||||||||||||| |||| |||||||||| |||||||    
T  15192137 atgacagagcatcatatgacattttttgttatgtttttcgtacttttctttgcatttgaagacaaataagatgaga 15192212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 166
Target Start/End: Original strand, 34850752 - 34850839
Alignment:
Q  79 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttg 166  Q
    |||||||||||||| |||||||||||||| | ||||| ||| |||||| ||||| |||| |||||| || |||||||| |||||||||    
T  34850752 attctaacttcttgttattgtgtttcttgcgaacaagcaacagtttaaatttggagttgcgatgacagaacatcatataatatttttg 34850839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 34864458 - 34864384
Alignment:
Q  154 tatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttg 228  Q
    |||||||||||| ||||||||||||||||||||||||| |||| |||||||||| ||| | | |||||| |||||    
T  34864458 tatgatattttttgttatgtttttagtacttttctttgtatttgaagacaaataagataaaagttagaggagttg 34864384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 12111510 - 12111446
Alignment:
Q  141 tgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaa 205  Q
    |||| ||||||||||||| |||||| |||||||||||||||||||| |||| |||| ||||||||    
T  12111510 tgacagagcatcatatgacattttttgttatgtttttagtacttttatttgcatttgaagacaaa 12111446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 18897921 - 18897992
Alignment:
Q  136 tgtgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 207  Q
    ||||||| |||| |||||||||| |||||||| | |||||||| |||||||||||| |||| ||||||||||    
T  18897921 tgtgatggcggatcatcatatgacatttttggctgtgtttttactacttttctttgcatttgaagacaaata 18897992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 222
Target Start/End: Complemental strand, 5906905 - 5906819
Alignment:
Q  137 gtgatgacggagcatcatatgatat-ttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagag 222  Q
    ||||||||| | ||||||||||||| |||| | |||||||||||||||||| |||| |||| |||||||| | ||||||| ||||||    
T  5906905 gtgatgacgaaacatcatatgatatatttttgctatgtttttagtacttttatttgcatttgaagacaaacaagatgagagttagag 5906819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 190
Target Start/End: Original strand, 10576371 - 10576437
Alignment:
Q  124 taagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtacttttcttt 190  Q
    |||||||||||||||||||| |||| ||||||||||||||| |  ||||||||||||  ||||||||    
T  10576371 taagtttggggttgtgatgatggagtatcatatgatattttagactatgtttttagttattttcttt 10576437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 9288142 - 9288204
Alignment:
Q  138 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaag 200  Q
    |||||| |||||| ||||||||||||| || ||||||||||||| ||||||||| || |||||    
T  9288142 tgatgaaggagcaccatatgatattttaggatatgtttttagtagttttctttgcatataaag 9288204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 25050227 - 25050164
Alignment:
Q  159 tatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagag 222  Q
    ||||||||| ||||||||||||| |||| |||| |||| |||||||||| ||||| | ||||||    
T  25050227 tatttttggctatgtttttagtatttttatttgtatttgaagacaaataagatgaaagttagag 25050164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 228
Target Start/End: Complemental strand, 25315414 - 25315324
Alignment:
Q  138 tgatgacggagcatcatatgatatttttggttatgttttt-agtacttttctttgaatttaaagacaaataggatgagaattagagtagttg 228  Q
    ||||||| ||||||||||||| ||||| | |||||||||| |||||||||||||  |||| |||| ||||| |||||||  ||||| |||||    
T  25315414 tgatgaccgagcatcatatgacattttag-ttatgttttttagtacttttctttacatttgaagataaataagatgagagatagaggagttg 25315324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 10320394 - 10320350
Alignment:
Q  146 gagcatcatatgatatttttggttatgtttttagtacttttcttt 190  Q
    ||||||||||||| |||||| | ||||||||||||| ||||||||    
T  10320394 gagcatcatatgacatttttcgctatgtttttagtaattttcttt 10320350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 17339995 - 17339927
Alignment:
Q  139 gatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 207  Q
    ||||| |||||||||||||||||||| || |||||||||| |  |||| |||  |||||||| ||||||    
T  17339995 gatgatggagcatcatatgatattttaggctatgtttttaattattttatttacatttaaaggcaaata 17339927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 19826667 - 19826707
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  19826667 cttgaggacaaggaatggttcaagtttggggttgtgatgac 19826707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 80 - 228
Target Start/End: Original strand, 21017750 - 21017899
Alignment:
Q  80 ttctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgata-tttttggttatgttttta 178  Q
    ||||||||||||| ||||||||| ||| |||||||| |||| |||||||||| ||||||||| || ||||||||||||||| ||||| ||||||||||||    
T  21017750 ttctaacttcttgttattgtgttgcttaaggacaagcaacgatttaagtttgaggttgtgataacagagcatcatatgatatttttttgttatgttttta 21017849  T
Q  179 gtacttttctttgaatttaaagacaaataggatgagaattagagtagttg 228  Q
    ||| ||||||||| |||| |||| ||||| ||||||| |||||| |||||    
T  21017850 gtatttttctttgcatttgaagaaaaataagatgagagttagaggagttg 21017899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 79 - 204
Target Start/End: Original strand, 13911138 - 13911263
Alignment:
Q  79 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 178  Q
    |||||||||| ||||||||||||| ||| |||||||| |||||||||||||| ||||||||||||||||| |||| |||||||||||   ||||||||||    
T  13911138 attctaacttattgctattgtgttactttaggacaagcaacggtttaagtttagggttgtgatgacggagaatcaaatgatatttttttctatgttttta 13911237  T
Q  179 gtacttttctttgaatttaaagacaa 204  Q
    ||| ||||||||| |||| |||||||    
T  13911238 gtaattttctttgtatttgaagacaa 13911263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 138 - 221
Target Start/End: Complemental strand, 25919647 - 25919564
Alignment:
Q  138 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattaga 221  Q
    |||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||| ||||||| |||||    
T  25919647 tgatgatggagcatcatatgatatttctggttatgtttttagtacatttctttgaatttgaagacaaataagatgagagttaga 25919564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 79 - 178
Target Start/End: Complemental strand, 8402792 - 8402693
Alignment:
Q  79 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 178  Q
    |||||| |||| ||| ||| |||| |||||||| ||| |||| ||||||||||||||||||||||| ||||||||||||||||||| |  ||||||||||    
T  8402792 attctatcttcctgcaattttgttgcttgaggaaaagcaacgatttaagtttggggttgtgatgacagagcatcatatgatattttagactatgttttta 8402693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 17637035 - 17637125
Alignment:
Q  138 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttg 228  Q
    ||||||||||||||||||||| |||||||| ||||||| || |||||||||||| | ||||||||||||| ||| ||||| |||| |||||    
T  17637035 tgatgacggagcatcatatgacatttttggctatgtttatattacttttctttgtaattaaagacaaataagataagaataagaggagttg 17637125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 5632732 - 5632668
Alignment:
Q  79 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatga 143  Q
    ||||||||||||||| ||| |||| |||| ||||||| |||||||||||||||||||||||||||    
T  5632732 attctaacttcttgccattttgttgcttggggacaagcaacggtttaagtttggggttgtgatga 5632668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 156
Target Start/End: Original strand, 11521039 - 11521090
Alignment:
Q  105 ttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatat 156  Q
    ||||||||||| |||||||||||||||| ||||||||||| |||||||||||    
T  11521039 ttgaggacaagcaacggtttaagtttggcgttgtgatgacagagcatcatat 11521090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 12573231 - 12573305
Alignment:
Q  147 agcatcatatgatatttttggttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattaga 221  Q
    |||||||||||| ||||| ||||||||||||||||| ||||||||| |||  |||||||||| ||||||| |||||    
T  12573231 agcatcatatgacatttt-ggttatgtttttagtactttttctttgcattagaagacaaataagatgagagttaga 12573305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 13549695 - 13549769
Alignment:
Q  147 agcatcatatgatatttttggttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattaga 221  Q
    |||||||||||| ||||| ||||||||||||||||| ||||||||| |||  |||||||||| ||||||| |||||    
T  13549695 agcatcatatgacatttt-ggttatgtttttagtactttttctttgcattagaagacaaataagatgagagttaga 13549769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 33914714 - 33914655
Alignment:
Q  169 tatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttg 228  Q
    ||||||||||||||||||||||| |||| |||||||||| ||||||| ||| || |||||    
T  33914714 tatgtttttagtacttttctttgcatttcaagacaaataagatgagagttataggagttg 33914655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 16970177 - 16970241
Alignment:
Q  142 gacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 207  Q
    ||||||||| |||||||||||||||  |||||||||||| |||||||||| |||| || |||||||    
T  16970177 gacggagca-catatgatatttttgactatgtttttagtgcttttctttgtatttgaacacaaata 16970241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 19219394 - 19219317
Alignment:
Q  138 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgaga 215  Q
    |||||||| |||||||||||||| |||| | | ||||||||||| |||||||||  ||| |||| ||||| |||||||    
T  19219394 tgatgacgaagcatcatatgatacttttagctgtgtttttagtatttttctttgcttttgaagataaataagatgaga 19219317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 10883984 - 10884024
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||||||||||| ||||||| ||||||||||||||||||||    
T  10883984 cttgaggacaaggaacggttcaagtttggggttgtgatgac 10884024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 205
Target Start/End: Original strand, 18065761 - 18065828
Alignment:
Q  138 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaa 205  Q
    ||||||||| |||| || ||| |||||||| ||||||||| ||| | ||||||| |||||||||||||    
T  18065761 tgatgacggggcattatgtgacatttttggctatgtttttggtaatattctttgcatttaaagacaaa 18065828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 227
Target Start/End: Complemental strand, 1475463 - 1475374
Alignment:
Q  138 tgatgacggagcatcatatgatatttttggttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattagagtagtt 227  Q
    |||||||  |||||||||||| ||||| || |||||||||||||| ||||||||| |||| ||| | |||| ||||||| |||||| ||||    
T  1475463 tgatgacatagcatcatatgacatttt-ggctatgtttttagtactttttctttgcatttgaagtctaataagatgagagttagaggagtt 1475374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 207
Target Start/End: Complemental strand, 31477771 - 31477705
Alignment:
Q  141 tgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 207  Q
    ||||| |||||||  |||||| || || ||||||||||||  ||||||||| |||||||||||||||    
T  31477771 tgacgaagcatcacttgatatattaggatatgtttttagttattttctttgtatttaaagacaaata 31477705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 16223612 - 16223572
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||||||||||| |||  |||||||||||||||||||||||    
T  16223612 cttgaggacaagcaacaatttaagtttggggttgtgatgac 16223572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 18541774 - 18541814
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  18541774 cttgaggacaaggaatggttcaagtttggggttgtgatgac 18541814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 31283869 - 31283909
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||||||||||| ||  ||||||||||||||||||||||||    
T  31283869 cttgaggacaagcaatagtttaagtttggggttgtgatgac 31283909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 47053927 - 47053967
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  47053927 cttgaggacaaggaatggttcaagtttggggttgtgatgac 47053967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 79 - 215
Target Start/End: Original strand, 7494584 - 7494720
Alignment:
Q  79 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 178  Q
    ||||| |||||||||||||||||| |||||||||||| ||| ||||||||||| |||||||||||  |||||||| ||||||||||||| |||  |||||    
T  7494584 attctgacttcttgctattgtgttgcttgaggacaagcaacagtttaagtttgtggttgtgatgaatgagcatcacatgatatttttggctattctttta 7494683  T
Q  179 gtacttttctttgaatttaaagacaaataggatgaga 215  Q
    ||||||||||||| | || |||||||| ||| |||||    
T  7494684 gtacttttctttgcacttgaagacaaacaggttgaga 7494720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 83 - 228
Target Start/End: Complemental strand, 20471049 - 20470903
Alignment:
Q  83 taacttcttgctattgtgtttcttgaggacaag-aaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagta 181  Q
    |||||||||||||| ||||| |||||||||||  ||||  |||||||||||||||||||||||| ||||||||||||  ||||||| | |||||||||||    
T  20471049 taacttcttgctatcgtgttgcttgaggacaaacaaacaatttaagtttggggttgtgatgacgaagcatcatatgaattttttggctttgtttttagta 20470950  T
Q  182 cttttctttgaatttaaagacaaataggatgagaattagagtagttg 228  Q
    ||||| |||  || | |||||||||| ||||| |||||||| |||||    
T  20470949 cttttatttatatgtgaagacaaataagatgataattagaggagttg 20470903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 83 - 222
Target Start/End: Original strand, 21471674 - 21471813
Alignment:
Q  83 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtac 182  Q
    |||||||| |||||||| || |||||||||||  ||| |||||||||||||||||||||||| ||||||||||||  | |||||||||||||||||||||    
T  21471674 taacttctagctattgtattgcttgaggacaatcaacagtttaagtttggggttgtgatgacagagcatcatatgcca-ttttggttatgtttttagtac 21471772  T
Q  183 -ttttctttgaatttaaagacaaataggatgagaattagag 222  Q
     ||||| ||| |||| |||||||||| ||||| | ||||||    
T  21471773 tttttccttgcatttgaagacaaataagatgatatttagag 21471813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 29544451 - 29544541
Alignment:
Q  138 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttg 228  Q
    |||||| ||||||||||||||||||||||| |||||||||| || ||||||||| |||| |||||||||| ||||||| |||||| |||||    
T  29544451 tgatgaaggagcatcatatgatatttttggctatgtttttattaattttctttgcatttgaagacaaataagatgagagttagaggagttg 29544541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 79 - 190
Target Start/End: Complemental strand, 9761646 - 9761537
Alignment:
Q  79 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 178  Q
    ||||||||||| ||||||||| |  |||||||||||| |||  ||||| ||||||||||||||||| ||||||||||||| | |||||| || |||||||    
T  9761646 attctaacttcatgctattgtctagcttgaggacaagcaacaatttaa-tttggggttgtgatgacagagcatcatatgaca-ttttggctacgttttta 9761549  T
Q  179 gtacttttcttt 190  Q
    ||||||||||||    
T  9761548 gtacttttcttt 9761537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 3269220 - 3269123
Alignment:
Q  83 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagt 180  Q
    |||||||||| |||| |||| |  |||||||| |||||||||||||||| |||||||||||| |||| |||||||||| ||| || ||||||||||||    
T  3269220 taacttcttgttattttgttgcgagaggacaataaacggtttaagtttgaggttgtgatgaccgagcttcatatgatactttaggctatgtttttagt 3269123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 7142030 - 7142099
Alignment:
Q  138 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 207  Q
    ||||||| ||||||||||||| |||||||| |||||||||| || ||||||||| |||||||||||||||    
T  7142030 tgatgacagagcatcatatgacatttttggctatgtttttaatagttttctttgcatttaaagacaaata 7142099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 138 - 234
Target Start/End: Complemental strand, 2632619 - 2632523
Alignment:
Q  138 tgatgacggagcatcatatgatatttttggttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattagagtagttgatgatg 234  Q
    ||||||| ||| ||| |||||||||||| ||||||||| |||||| ||||||||| |||||||||| ||||| |||||| |||||| ||||| |||||    
T  2632619 tgatgacagagtatcgtatgatattttt-gttatgtttatagtactttttctttgcatttaaagactaatagtatgagagttagaggagttgttgatg 2632523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 9802057 - 9801996
Alignment:
Q  128 tttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtacttttcttt 190  Q
    ||||||||||||||||| ||||||||||||| | |||||| || |||||||||||||||||||    
T  9802057 tttggggttgtgatgacagagcatcatatgaca-ttttggctacgtttttagtacttttcttt 9801996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 2353421 - 2353357
Alignment:
Q  140 atgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaa 204  Q
    ||||||||||||| ||||||||||| || ||||||||||||  ||||||||| |||| |||||||    
T  2353421 atgacggagcatcgtatgatattttaggctatgtttttagttgttttctttgcatttgaagacaa 2353357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 206
Target Start/End: Complemental strand, 16536811 - 16536689
Alignment:
Q  83 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtac 182  Q
    |||||||||  |||| |||| |||||||||||  |||  |||||||||  ||||||||||| ||| |||||| |||||||||  |||||| |||| ||      
T  16536811 taacttctttttattttgttgcttgaggacaaacaacaatttaagtttaaggttgtgatgatggaacatcatctgatattttaagttatg-ttttggtta 16536713  T
Q  183 ttttctttgaatttaaagacaaat 206  Q
    ||||||||| |||| |||||||||    
T  16536712 ttttctttgcatttgaagacaaat 16536689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 206
Target Start/End: Complemental strand, 16577513 - 16577387
Alignment:
Q  79 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 178  Q
    |||||||||||||  |||| | || |||||||||||  |||  |||||||||  ||||||||||| ||| ||||||||||||||||  | ||||||||      
T  16577513 attctaacttctttttatttttttgcttgaggacaaacaacaatttaagtttaaggttgtgatgatggaacatcatatgatattttaaggtatgttttgg 16577414  T
Q  179 gtacttttctttgaatttaaagacaaat 206  Q
     || ||||||||| |||| |||||||||    
T  16577413 cta-ttttctttgcatttgaagacaaat 16577387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 206
Target Start/End: Original strand, 16588149 - 16588275
Alignment:
Q  79 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 178  Q
    |||||||||||||  |||| | || |||||||||||  |||  |||||||||  ||||||||||| ||| ||||||||||||||||  | ||||||||      
T  16588149 attctaacttctttttatttttttgcttgaggacaaacaacaatttaagtttaaggttgtgatgatggaacatcatatgatattttaaggtatgttttgg 16588248  T
Q  179 gtacttttctttgaatttaaagacaaat 206  Q
     || ||||||||| |||| |||||||||    
T  16588249 cta-ttttctttgcatttgaagacaaat 16588275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 206
Target Start/End: Original strand, 16628851 - 16628973
Alignment:
Q  83 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtac 182  Q
    |||||||||  |||| |||| |||||||||||  |||  |||||||||  ||||||||||| ||| |||||| |||||||||  |||||| |||| ||      
T  16628851 taacttctttttattttgttgcttgaggacaaacaacaatttaagtttaaggttgtgatgatggaacatcatctgatattttaagttatg-ttttggtta 16628949  T
Q  183 ttttctttgaatttaaagacaaat 206  Q
    ||||||||| |||| |||||||||    
T  16628950 ttttctttgcatttgaagacaaat 16628973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 20446171 - 20446261
Alignment:
Q  138 tgatgacggagcatcatatgatatttttggttatgtttttagtactttt-ctttgaatttaaagacaaataggatgagaattagagtagttg 228  Q
    ||||||| ||||| ||||||||||||| | | ||||||||| ||||||| ||||| |||| ||||||| || |||||||||||||| |||||    
T  20446171 tgatgacagagcaacatatgatattttagct-atgtttttaatactttttctttgcatttgaagacaattaagatgagaattagaggagttg 20446261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 161
Target Start/End: Original strand, 1074341 - 1074422
Alignment:
Q  79 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatat 161  Q
    |||||| |||||||||||| ||||  ||| ||||||| |||| ||||||||| |||||||||||| | ||||| |||||||||    
T  1074341 attctaccttcttgctattttgttgtttggggacaagcaacgatttaagtttagggttgtgatgatgtagcat-atatgatat 1074422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 23124833 - 23124922
Alignment:
Q  138 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttg 228  Q
    |||||| |||||||||| ||| ||||||   |||||||||||||| |||||||  |||| |||||||||| ||||||| |||||| |||||    
T  23124833 tgatgatggagcatcatctgacattttttactatgtttttagtac-tttctttacatttgaagacaaataagatgagatttagaggagttg 23124922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 7956058 - 7956119
Alignment:
Q  79 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtga 140  Q
    |||||| | ||||| |||| |||| ||| ||||||||||||| |||||||||||||||||||    
T  7956058 attctaccgtcttgatattttgttgcttcaggacaagaaacgatttaagtttggggttgtga 7956119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 18496498 - 18496555
Alignment:
Q  139 gatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaattt 196  Q
    ||||| |||||| ||||||||||||| || ||||||||||||| ||||||||| ||||    
T  18496498 gatgatggagcaccatatgatattttaggctatgtttttagtagttttctttgcattt 18496555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 21545984 - 21545929
Alignment:
Q  138 tgatgacggagcat---catatgatatttttggttatgtttttagtacttttcttt 190  Q
    ||||||||||||||   |||||||||||||||  ||||||||||||||||||||||    
T  21545984 tgatgacggagcatgatcatatgatatttttgactatgtttttagtacttttcttt 21545929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 13287676 - 13287716
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||||||||||||||| || |||||||||||||||||||||    
T  13287676 cttgaggacaagaaacagtctaagtttggggttgtgatgac 13287716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 26137074 - 26137034
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||||||||||| ||||||| ||||||||||||||||||||    
T  26137074 cttgaggacaaggaacggttcaagtttggggttgtgatgac 26137034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 7815267 - 7815332
Alignment:
Q  150 atcatatgatatttttggttatgtttttagtacttttct-ttgaatttaaagacaaataggatgaga 215  Q
    ||||||||||||||| ||||||||||||||||||||| | ||| |||| |||| ||||| |||||||    
T  7815267 atcatatgatatttt-ggttatgtttttagtacttttttgttgcatttgaagataaataagatgaga 7815332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 22532830 - 22532784
Alignment:
Q  134 gttgtgatgacggagcatcatatgatatttttggttatgtttttagt 180  Q
    ||||| |||| |||||||||||||||||||| || ||||||||||||    
T  22532830 gttgtaatgatggagcatcatatgatattttaggctatgtttttagt 22532784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 2506786 - 2506826
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||||||||||| |||  |||||||||||||||||||||||    
T  2506786 cttgaggacaagcaactatttaagtttggggttgtgatgac 2506826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 4596958 - 4596918
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  4596958 cttgaggacaaggaatggttcaagtttggggttgtgatgac 4596918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 15170730 - 15170770
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||||||||||| ||| ||||| ||||||||||||||||||    
T  15170730 cttgaggacaagcaacagtttatgtttggggttgtgatgac 15170770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 19154949 - 19154909
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||||||||||| ||| | ||||||||||||||||||||||    
T  19154949 cttgaggacaagcaacagattaagtttggggttgtgatgac 19154909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 20754348 - 20754308
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||||||||||| ||| | ||||||||||||||||||||||    
T  20754348 cttgaggacaagcaacagattaagtttggggttgtgatgac 20754308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 39270239 - 39270279
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||||||||||| |||  |||||||||||||||||||||||    
T  39270239 cttgaggacaagcaacaatttaagtttggggttgtgatgac 39270279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 82 - 228
Target Start/End: Original strand, 24120107 - 24120253
Alignment:
Q  82 ctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagta 181  Q
    ||||||| |||||||||||||  ||||||||||| |||  ||||  || ||||||||||||||| | ||||||||||||||||| | |||||||||||||    
T  24120107 ctaacttattgctattgtgttgattgaggacaagcaacattttattttgggggttgtgatgacgaatcatcatatgatattttttgctatgtttttagta 24120206  T
Q  182 cttttctttgaatttaaagacaaataggatgagaattagagtagttg 228  Q
    |||||||||| |||| |||| ||||| ||||||| |||||| |||||    
T  24120207 cttttctttgcatttgaagagaaataagatgagagttagaggagttg 24120253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 79 - 228
Target Start/End: Complemental strand, 16052519 - 16052370
Alignment:
Q  79 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 178  Q
    |||||||||||||||||||||| | |   |||||||   |  |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  16052519 attctaacttcttgctattgtgctgcaaaaggacaaacgagagtttaagtttagggttgtgatgacggagcatcatatgatatttttggctatgttttta 16052420  T
Q  179 gtacttttctttgaatttaaagacaaataggatgagaattagagtagttg 228  Q
    |||||||| |||| |||| | ||||||||  |||||| |||||| |||||    
T  16052419 gtacttttatttgcatttgaggacaaataaaatgagagttagaggagttg 16052370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 87 - 207
Target Start/End: Complemental strand, 22894768 - 22894648
Alignment:
Q  87 ttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtactttt 186  Q
    |||||||||||||||||||||||||||||  || ||||||||||| | |||||||||| ||||||||||||| |||||| | ||||||||||||||||||    
T  22894768 ttcttgctattgtgtttcttgaggacaagggacagtttaagtttgagattgtgatgacagagcatcatatgacatttttaggtatgtttttagtactttt 22894669  T
Q  187 ctttgaatttaaagacaaata 207  Q
    ||| | |||| ||| ||||||    
T  22894668 cttcgcatttgaagccaaata 22894648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 28252571 - 28252481
Alignment:
Q  131 ggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattaga 221  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||| || | ||||||||||||||| ||||||| |||||    
T  28252571 ggggttgtgatgaaggagcatcatatgatattttttgttatgtttttaatacttttattcgtatttaaagacaaataagatgagagttaga 28252481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 228
Target Start/End: Complemental strand, 28901582 - 28901433
Alignment:
Q  79 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 178  Q
    ||||||||||||||||| |||||| |||||| ||||| |||| |||||||||   ||||||||   |||||||||||||| |||||||| |||| |||||    
T  28901582 attctaacttcttgctactgtgttgcttgagaacaagcaacgatttaagtttctagttgtgatattggagcatcatatgaaatttttggctatgctttta 28901483  T
Q  179 gtacttttctttgaatttaaagacaaataggatgagaattagagtagttg 228  Q
     |||||||||||| |||| || ||||||| | |||||  ||||| |||||    
T  28901482 atacttttctttgcatttgaatacaaataagttgagagatagaggagttg 28901433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 79 - 228
Target Start/End: Original strand, 10866861 - 10867010
Alignment:
Q  79 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 178  Q
    |||||| ||| |||||||| |||  |||||||||||  || ||||||| |||||||||||||||| ||| ||||||||||||||||| | |||| |||||    
T  10866861 attctatctttttgctattttgtagcttgaggacaaacaaaggtttaattttggggttgtgatgatggaacatcatatgatattttttggtatgatttta 10866960  T
Q  179 gtacttttctttgaatttaaagacaaataggatgagaattagagtagttg 228  Q
    ||  |||||||||||||  ||| |||||| || |  | ||||||||||||    
T  10866961 gttattttctttgaattcgaaggcaaataagaggtcatttagagtagttg 10867010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 121 - 228
Target Start/End: Complemental strand, 13082137 - 13082030
Alignment:
Q  121 gtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaatta 219  Q
    ||||||||||||||||||||||||  | |||||||||| | ||||| ||||||||||||||| ||||||||| |||| |||||||||| ||||||| |||    
T  13082137 gtttaagtttggggttgtgatgacaaaacatcatatgaca-ttttgattatgtttttagtactttttctttgcatttgaagacaaataagatgagagtta 13082039  T
Q  220 gagtagttg 228  Q
    ||| |||||    
T  13082038 gaggagttg 13082030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 5570386 - 5570305
Alignment:
Q  83 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttt 164  Q
    |||||||||  |||||||||  ||||| ||||| |||  |||||||||||||||||||| ||||||||||||||||||||||    
T  5570386 taacttcttattattgtgttgtttgagtacaagcaacaatttaagtttggggttgtgataacggagcatcatatgatatttt 5570305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 148 - 228
Target Start/End: Original strand, 12956431 - 12956511
Alignment:
Q  148 gcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttg 228  Q
    ||||||| |||||||||||  ||||||||||||||||||||||| |||| |||| ||||| ||||||| |||||| |||||    
T  12956431 gcatcatgtgatatttttgtctatgtttttagtacttttctttgcatttgaagataaataagatgagagttagaggagttg 12956511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 14977280 - 14977200
Alignment:
Q  148 gcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttg 228  Q
    ||||||||||||||||||   ||||||||||| ||||||||||| |||| |||||||||| ||||||| |||||| |||||    
T  14977280 gcatcatatgatatttttaactatgtttttagcacttttctttgcattttaagacaaataagatgagagttagaggagttg 14977200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 28973573 - 28973490
Alignment:
Q  83 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttg 166  Q
    |||||||||| |||||||||||||   |||||| ||| |||||||||||||||||  |||||  | ||||||||||||||||||    
T  28973573 taacttcttgttattgtgtttcttaccgacaagcaactgtttaagtttggggttgcaatgacaaaacatcatatgatatttttg 28973490  T

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Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 11310379 - 11310318
Alignment:
Q  146 gagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 207  Q
    |||||||||||||||||||| | |||||||||||||||| |||||| |||| |||| |||||    
T  11310379 gagcatcatatgatattttttgctatgtttttagtacttatctttgcatttgaagaaaaata 11310318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 190
Target Start/End: Original strand, 29291670 - 29291755
Alignment:
Q  105 ttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtacttttcttt 190  Q
    ||||||| ||| |||| |||||||||| |||| |||| ||||| |||||||||||||||| || ||||||||| ||  ||||||||    
T  29291670 ttgaggataagcaacgatttaagtttgaggttatgattacggaacatcatatgatattttaggctatgttttttgttattttcttt 29291755  T

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Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 228
Target Start/End: Original strand, 16054225 - 16054316
Alignment:
Q  137 gtgatgacggagcatcatatgatatttttggttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattagagtagttg 228  Q
    |||||||| ||||||||||||| | |||||| ||||| |||||||| ||||||||| |||| |||||||||| ||| ||| |||||| |||||    
T  16054225 gtgatgacagagcatcatatgaca-ttttggctatgtctttagtactttttctttgcatttgaagacaaataagataagagttagaggagttg 16054316  T

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Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 32239219 - 32239309
Alignment:
Q  138 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttg 228  Q
    |||||| || ||||| |||||||||||||| ||||||||||| ||||||||||  |||| |||| | ||| ||| | |||||||| |||||    
T  32239219 tgatgatggtgcatcgtatgatatttttggctatgtttttagcacttttctttacatttgaagatagataagataataattagaggagttg 32239309  T

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Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 228
Target Start/End: Original strand, 6358629 - 6358720
Alignment:
Q  137 gtgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttg 228  Q
    |||||||| |||||  |||||| ||||| || |||||||||||||||||| |||| |||| |||||| ||| | |||||  ||||| |||||    
T  6358629 gtgatgacagagcactatatgacattttgggctatgtttttagtacttttatttgcatttgaagacatataagttgagagatagaggagttg 6358720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 228
Target Start/End: Complemental strand, 29047499 - 29047409
Alignment:
Q  138 tgatgacggagcatcatatgatatttttggttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattagagtagttg 228  Q
    ||||||| |||||||||||||||  ||||| ||| || ||||||| ||||||||| |||| || ||||||| ||||||| |||||| |||||    
T  29047499 tgatgacagagcatcatatgata-atttggctatattattagtactttttctttgcatttgaaaacaaataagatgagagttagaggagttg 29047409  T

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Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 30851284 - 30851230
Alignment:
Q  136 tgtgatgacggagcatcatatgatatttttggttatgtttttagtacttttcttt 190  Q
    |||||||| ||| | ||||||||||||||||| ||||||||||||  ||||||||    
T  30851284 tgtgatgatggaacgtcatatgatatttttggctatgtttttagttattttcttt 30851230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 26829427 - 26829472
Alignment:
Q  99 tgtttcttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||| |||||||||||||||| || ||||||||||||||| |||||    
T  26829427 tgttacttgaggacaagaaacagtctaagtttggggttgtaatgac 26829472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 25180687 - 25180727
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||||||| |||||||  |||||||||||||||||||||||    
T  25180687 cttgaggataagaaactatttaagtttggggttgtgatgac 25180727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 29765357 - 29765397
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||||||||||| |||  |||||||||||||||||||||||    
T  29765357 cttgaggacaagcaacaatttaagtttggggttgtgatgac 29765397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 30543711 - 30543763
Alignment:
Q  154 tatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaat 206  Q
    |||||||||||| | ||||||||||||| |||| |||| |||| |||||||||    
T  30543711 tatgatatttttagctatgtttttagtatttttttttgcatttgaagacaaat 30543763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 33878272 - 33878232
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  33878272 cttgaggacaaggaatggttcaagtttggggttgtgatgac 33878232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 83 - 205
Target Start/End: Complemental strand, 22783 - 22661
Alignment:
Q  83 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtac 182  Q
    |||||||||||||||||||| ||||||| |||| |||  ||||||||||||||||||||||  || ||||||||   |||||||| ||||||||| ||||    
T  22783 taacttcttgctattgtgttgcttgagggcaagcaacactttaagtttggggttgtgatgatagaccatcatataccatttttggctatgttttttgtac 22684  T
Q  183 ttttctttgaatttaaagacaaa 205  Q
    |||| |||| |||| ||||||||    
T  22683 ttttatttgcatttgaagacaaa 22661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1026 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold1026
Description:

Target: scaffold1026; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 81 - 200
Target Start/End: Complemental strand, 2071 - 1952
Alignment:
Q  81 tctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagt 180  Q
    ||||||||||||||||| | || ||||| |||||| |||| |||||||||||||||| ||||| |||  || ||||||| |||||   ||||||||||||    
T  2071 tctaacttcttgctatttttttgcttgatgacaagtaacgttttaagtttggggttgcgatgatggaatataatatgatgtttttaactatgtttttagt 1972  T
Q  181 acttttctttgaatttaaag 200  Q
      ||||||||| ||||||||    
T  1971 tattttctttgcatttaaag 1952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 6128 - 6205
Alignment:
Q  138 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgaga 215  Q
    |||||||  |||||||||||  |||||||| ||||||||||||||||||||||  ||||||| ||||||| |||||||    
T  6128 tgatgacatagcatcatatggcatttttggctatgtttttagtacttttctttccatttaaacacaaataagatgaga 6205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 207
Target Start/End: Original strand, 21336 - 21398
Alignment:
Q  145 ggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 207  Q
    |||||||||||||||||||||  |||||||||||||  ||||||||| |||| |||| |||||    
T  21336 ggagcatcatatgatattttttattatgtttttagtgtttttctttgcatttgaagaaaaata 21398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 8892 - 8816
Alignment:
Q  138 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgag 214  Q
    |||||| ||| ||||||||||||||||||||||| |||||||||||||| |||  |||| |||| ||||| ||||||    
T  8892 tgatgatggaacatcatatgatatttttggttatttttttagtacttttattttcattttaagaaaaataagatgag 8816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 13239 - 13170
Alignment:
Q  153 atatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagag 222  Q
    ||||||||||||| |||||||||||||||||||| |||  || | |||||||||| ||||||| ||||||    
T  13239 atatgatatttttagttatgtttttagtacttttattttcatattaagacaaataagatgagagttagag 13170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 446937 - 447014
Alignment:
Q  138 tgatgacggagcatcatatgatatttttggttatgtttttagtactttt-ctttgaatttaaagacaaataggatgaga 215  Q
    ||||||| |||||||||||||||||||| | |||||||||||||||||| ||||  |||| |||||||||| |||||||    
T  446937 tgatgacagagcatcatatgatattttt-gctatgtttttagtacttttcctttacatttgaagacaaataagatgaga 447014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 27128 - 27068
Alignment:
Q  147 agcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 207  Q
    ||||||| |||||||||| || ||||||||||||||||||||||| |||| |||| |||||    
T  27128 agcatcacatgatattttcggctatgtttttagtacttttctttgcatttgaagataaata 27068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 24001 - 24041
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||||||||||| || |||||||||||||||||||||||||    
T  24001 cttgaggacaaggaatggtttaagtttggggttgtgatgac 24041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 28239 - 28279
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||||||||||| ||||||| ||||||||||||||||||||    
T  28239 cttgaggacaaggaacggttcaagtttggggttgtgatgac 28279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 25278 - 25216
Alignment:
Q  79 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgat 141  Q
    |||||||||| || ||||| |||| |||||||||||| |||   |||||||||||||||||||    
T  25278 attctaacttttttctattttgttacttgaggacaagcaacatattaagtttggggttgtgat 25216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 28544 - 28585
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgacg 145  Q
    |||||||||||| || |||| |||||||||||||||||||||    
T  28544 cttgaggacaaggaatggttcaagtttggggttgtgatgacg 28585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 3881 - 3841
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  3881 cttgaggacaaggaatggttcaagtttggggttgtgatgac 3841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 1094 - 1054
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  1094 cttgaggacaaggaatggttcaagtttggggttgtgatgac 1054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 3979 - 4023
Alignment:
Q  99 tgtttcttgaggacaagaaacggtttaagtttggggttgtgatga 143  Q
    |||| ||||||||| ||||| |||| |||||||||||||||||||    
T  3979 tgttccttgaggactagaaagggttcaagtttggggttgtgatga 4023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 38422 - 38382
Alignment:
Q  104 cttgaggacaagaaacggtttaagtttggggttgtgatgac 144  Q
    |||||||||||| |||  |||||||||||||||||||||||    
T  38422 cttgaggacaagcaacaatttaagtttggggttgtgatgac 38382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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