View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6090_low_2 (Length: 449)
Name: NF6090_low_2
Description: NF6090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6090_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 43684151 - 43683956
Alignment:
| Q |
15 |
agatatgttatttatttgaaaacatgggtgacagatgcaaaaagggtcctgctataattnnnnnnngaggtcctacatccatatttgtgtgtgtcgtgat |
114 |
Q |
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| T |
43684151 |
agatatgttatttatttgaaaacatgggtgacagatgcaaaaagggtcccactataattaaaaaaagaagtcctacatccatatttgtgtgtgtcgtgat |
43684052 |
T |
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| Q |
115 |
cctgtcgcattatattgcttcgtgagatgcaacatttcccaaattatatactaagttcatttttaaagtttgatattcatatgaatttcatccaata |
211 |
Q |
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| T |
43684051 |
cctgtcgcattatattgcttcgtgagatgcaacatttctcaaattatatact-agttcatttttaaagtgtgatactcatatgaatttcatccaata |
43683956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 344 - 448
Target Start/End: Complemental strand, 43683837 - 43683733
Alignment:
| Q |
344 |
cattgaaaaatcgggttcgaatgtaaaaattacattttgggagtaacagatcacaatcaatagaaacatggcgcacatattcgtaccttatgatgatgtc |
443 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
43683837 |
cattgaaaaatcgggttcgaatgtaaaaattacattttgggagtaacagatcacaatcaatagaaacatggcgcacatattcgtaccttatggttatgtc |
43683738 |
T |
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| Q |
444 |
catct |
448 |
Q |
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||||| |
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| T |
43683737 |
catct |
43683733 |
T |
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