View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6090_low_3 (Length: 247)

Name: NF6090_low_3
Description: NF6090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6090_low_3
NF6090_low_3
[»] chr2 (9 HSPs)
chr2 (19-234)||(6915277-6915492)
chr2 (66-164)||(10543505-10543603)
chr2 (66-164)||(10471307-10471405)
chr2 (66-164)||(28106207-28106305)
chr2 (66-146)||(27966389-27966469)
chr2 (66-164)||(10859023-10859121)
chr2 (83-145)||(9081351-9081413)
chr2 (19-60)||(10507349-10507390)
chr2 (73-137)||(10505487-10505551)
[»] chr7 (3 HSPs)
chr7 (66-164)||(15044800-15044898)
chr7 (161-234)||(15043988-15044061)
chr7 (22-64)||(15045570-15045612)
[»] chr5 (1 HSPs)
chr5 (66-164)||(33601026-33601124)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 6915277 - 6915492
Alignment:
Q  19 gcacggaaatttataccggtattcatgggtagtgctgtcaaaaacacgggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6915277 gcacggaaatttataccggtattcatgggtagtgctgtcaaaaacacgggggtacaaccacttctggatggtgtagttagttatttgccttgtccgattg 6915376  T
Q  119 aagttagtaattatgctcttgaccaatccaagaatgaggagaaggttcagctgactggaagtcccgatgggccccttgtagcattggctttcaagttgga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6915377 aagttagtaattatgctcttgaccaatccaagaatgaggagaaggttcagctgactggaagtcccgatgggcctcttgtagcattggctttcaagttgga 6915476  T
Q  219 gcaaaggaagtttggt 234  Q
    ||||| ||||||||||    
T  6915477 gcaaacgaagtttggt 6915492  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 10543603 - 10543505
Alignment:
Q  66 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 164  Q
    |||| |||||| |||| ||||||||||| ||| ||||||||| ||||| | ||||| ||||||||||||||| | |||||||||||||||||| |||||    
T  10543603 ggggttacaactacttttggatggtgtacttaattatttgccgtgtccaactgaagctagtaattatgctctcgtccaatccaagaatgaggaaaaggt 10543505  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 10471405 - 10471307
Alignment:
Q  66 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 164  Q
    |||| |||||| |||| ||||||||||| ||| ||||||||| ||||| | ||||| ||||||||||||||| | |||||| ||||||||||| |||||    
T  10471405 ggggctacaactacttttggatggtgtacttaattatttgccgtgtccaactgaagctagtaattatgctctcgtccaatctaagaatgaggaaaaggt 10471307  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 28106207 - 28106305
Alignment:
Q  66 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 164  Q
    |||| |||||| |||| ||||||||||| ||| ||||||||| ||||| ||||||| |||||||||| ||||||||||||| ||| ||| ||| |||||    
T  28106207 ggggctacaactacttttggatggtgtaattaattatttgccgtgtccaattgaagctagtaattatactcttgaccaatctaagcatggggaaaaggt 28106305  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 66 - 146
Target Start/End: Complemental strand, 27966469 - 27966389
Alignment:
Q  66 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatc 146  Q
    |||| |||||| |||| ||||||||||| ||| ||||||||| ||||| ||||||| |||||||||| |||||||||||||    
T  27966469 ggggctacaactacttttggatggtgtaattaattatttgccgtgtccaattgaagctagtaattatactcttgaccaatc 27966389  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 10859121 - 10859023
Alignment:
Q  66 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 164  Q
    |||| |||||| |||| |||||||||||  || ||||||||| ||||| | |||||||||||||||| |||| ||| |||| ||||||| ||| |||||    
T  10859121 ggggctacaactacttttggatggtgtaactaattatttgccctgtccaactgaagttagtaattattctctcgacaaatctaagaatggggaaaaggt 10859023  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 9081351 - 9081413
Alignment:
Q  83 tggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaat 145  Q
    ||||||||||| ||| ||||||||| ||||| |||||||  ||||||||||| || |||||||    
T  9081351 tggatggtgtacttaattatttgccgtgtccaattgaagcaagtaattatgcgctcgaccaat 9081413  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 10507390 - 10507349
Alignment:
Q  19 gcacggaaatttataccggtattcatgggtagtgctgtcaaa 60  Q
    ||||||||||||||||| ||||||||||| |||||| |||||    
T  10507390 gcacggaaatttatacccgtattcatgggcagtgctttcaaa 10507349  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 10505551 - 10505487
Alignment:
Q  73 caaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctct 137  Q
    |||| |||| ||||||||||  ||| ||||||||| ||||| | ||||| |||||||||||||||    
T  10505551 caactacttttggatggtgtgcttaattatttgccgtgtccaactgaagctagtaattatgctct 10505487  T

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Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 15044898 - 15044800
Alignment:
Q  66 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 164  Q
    |||| ||||||||||||||||||||||| ||| ||||||||| ||||| |||||||||| ||||||||| ||||||||||| || || |||||||||||    
T  15044898 ggggatacaaccacttctggatggtgtacttagttatttgccatgtccaattgaagttaataattatgcccttgaccaatctaataaggaggagaaggt 15044800  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 161 - 234
Target Start/End: Complemental strand, 15044061 - 15043988
Alignment:
Q  161 aggttcagctgactggaagtcccgatgggccccttgtagcattggctttcaagttggagcaaaggaagtttggt 234  Q
    ||||| ||||| |||| | ||| |||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  15044061 aggttgagctgcctggtaatcctgatgggccccttgtagcattggctttcaagttggaggaaagtaagtttggt 15043988  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 15045612 - 15045570
Alignment:
Q  22 cggaaatttataccggtattcatgggtagtgctgtcaaaaaca 64  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  15045612 cggaaatttataccggtattcatgggtagtgctttcaaaaaca 15045570  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 33601124 - 33601026
Alignment:
Q  66 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 164  Q
    |||| ||||||||||| ||||||||||  ||| | ||||||| ||||| | |||||  | ||||||||||||   |||||| ||||||||||| |||||    
T  33601124 ggggctacaaccacttttggatggtgtgcttaataatttgccgtgtccaactgaagcaactaattatgctctcatccaatctaagaatgaggaaaaggt 33601026  T

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