View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6090_low_4 (Length: 240)

Name: NF6090_low_4
Description: NF6090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6090_low_4
NF6090_low_4
[»] chr4 (2 HSPs)
chr4 (68-240)||(32874508-32874680)
chr4 (1-38)||(32874441-32874478)


Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 32874508 - 32874680
Alignment:
Q  68 gtgtaggttgcctccattttacaaatttcttggcaccactatctggtagatattacgtggttctcccagaaacgctcaaaatttcttgtgatttcagaca 167  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32874508 gtgtaggttgcctccattttacaaatttcttgacaccactatctggtagatattacgtcgttctcccagaaacgctcaaaatttcttgtgatttcagaca 32874607  T
Q  168 ctgctagctcaactttctgctagaagttgttttggttcttcaactgacactagccacaaacatggtcaattat 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32874608 ctgctagctcaactttctgctagaagttgttttggttcttcaactgacactagccacaaacatggtcaattat 32874680  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 32874441 - 32874478
Alignment:
Q  1 tgaataggttcaatcatatacaataataaagtaaaata 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32874441 tgaataggttcaatcatatacaataataaagtaaaata 32874478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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