View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6091_low_3 (Length: 497)

Name: NF6091_low_3
Description: NF6091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6091_low_3
NF6091_low_3
[»] chr6 (26 HSPs)
chr6 (18-490)||(5689144-5689618)
chr6 (298-490)||(5177602-5177793)
chr6 (345-490)||(5279473-5279618)
chr6 (336-469)||(5242774-5242907)
chr6 (347-469)||(5345940-5346062)
chr6 (336-469)||(5126891-5127024)
chr6 (339-467)||(5283473-5283601)
chr6 (338-469)||(5156272-5156403)
chr6 (371-465)||(5448547-5448641)
chr6 (342-469)||(5438920-5439047)
chr6 (370-469)||(5101077-5101176)
chr6 (370-469)||(5136178-5136277)
chr6 (338-469)||(5353122-5353253)
chr6 (346-466)||(5098124-5098244)
chr6 (333-455)||(5181047-5181169)
chr6 (338-467)||(5334087-5334213)
chr6 (343-469)||(5351310-5351436)
chr6 (348-469)||(5372012-5372133)
chr6 (328-375)||(5253465-5253512)
chr6 (343-469)||(5426810-5426936)
chr6 (412-469)||(5253525-5253582)
chr6 (380-469)||(5256409-5256498)
chr6 (338-469)||(5397951-5398082)
chr6 (419-469)||(5065711-5065761)
chr6 (429-471)||(5072939-5072981)
chr6 (31-64)||(5177342-5177375)
[»] chr3 (4 HSPs)
chr3 (338-464)||(47985657-47985783)
chr3 (338-464)||(47994944-47995070)
chr3 (338-464)||(48004231-48004357)
chr3 (338-464)||(48013516-48013642)
[»] chr7 (1 HSPs)
chr7 (371-463)||(36213186-36213278)
[»] chr4 (1 HSPs)
chr4 (405-466)||(4319564-4319625)
[»] scaffold0294 (1 HSPs)
scaffold0294 (391-465)||(8137-8211)


Alignment Details
Target: chr6 (Bit Score: 397; Significance: 0; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 18 - 490
Target Start/End: Complemental strand, 5689618 - 5689144
Alignment:
Q  18 aagtctataactcttaaaaa--cttgcatctaatgtaagtctgctgaatcctaaacattttaaaatgatttgcgactacacacactgcacactttagtta 115  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5689618 aagtctataactcttaaaaaaacttgcatctaatgtaagtctgctgaatcctaaacattttaaaatgatttgcgactacacacactgcacactttagtta 5689519  T
Q  116 gtggtacaattttgttgttattatcaaaagaataaagaaaccctcaattttattcttgttgtatggtattttaacctcgactggcagagtgttctatgaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5689518 gtggtacaattttgttgttattatcaaaagaataaagaaaccctcaattttattcttgttgtatggtattttaacctcgactggcagagtgttctatgaa 5689419  T
Q  216 cccggannnnnnnnnncctgcgtaactcaataatacaagaatgattagttatcctatggagaaaaattatatatctatttgttgagtgacataaatatat 315  Q
    ||||||          ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5689418 cccggattttttttttcctgcataactcaataatacaagaatgattagttatcctatggagaaaaattatatatctatttgttgagtgacataaataaat 5689319  T
Q  316 tgctnnnnnnnctgagtctgtttttacttttacagaatatggatgagaatgggtgtggtggttgtttgtttcctagtgatagttgtccagattggttaac 415  Q
    ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5689318 tgctaaaaaaactgagtctgtttttacttttacagaatatggatgagaatgggtgtggtggttgtttgtttcctagtgatagttgtccagattggttaac 5689219  T
Q  416 cttcaattgtgaaggttcttcggtaacgtttgaagtccctcaagtggaagggcgcactttaaagacattgatgat 490  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5689218 cttcaattgcgaaggttcttcggtaatgtttgaagtccctcaagtggaagggcgcactttaaagacattgatgat 5689144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 298 - 490
Target Start/End: Original strand, 5177602 - 5177793
Alignment:
Q  298 tgagtgacataaatatattgctnnnnnnnctgagtctgtttttacttttacagaatatggatgagaatgggtgtggtggttgtttgtttcctagtgatag 397  Q
    ||||||||||||||||||||||       ||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5177602 tgagtgacataaatatattgctaaaaaaactgagcctg-ttttccttttacagaatatggatgagaatgggtgtggtggttgtttgtttcctagtgatag 5177700  T
Q  398 ttgtccagattggttaaccttcaattgtgaaggttcttcggtaacgtttgaagtccctcaagtggaagggcgcactttaaagacattgatgat 490  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||    
T  5177701 ttgtccagattggttaaccttcaattgcgaaggttcttcggtaatgtttgaagtccctcaagtggaagggtgcactttaaagacaatgatgat 5177793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 345 - 490
Target Start/End: Original strand, 5279473 - 5279618
Alignment:
Q  345 ttacagaatatggatgagaatgggtgtggtggttgtttgtttcctagtgatagttgtccagattggttaaccttcaattgtgaaggttcttcggtaacgt 444  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  5279473 ttacagaatatggatgagaatgggtgtggtggttgtttgtttccaagtgatagttgtccagattggttaaccttcaattgcgaaggttcttcggtaatgt 5279572  T
Q  445 ttgaagtccctcaagtggaagggcgcactttaaagacattgatgat 490  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  5279573 ttgaagtccctcaagtggaagggtgcactttaaagacattgatgat 5279618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 336 - 469
Target Start/End: Complemental strand, 5242907 - 5242774
Alignment:
Q  336 tttttacttttacagaatatggatgagaatgggtgtggtggttgtttgtttcctagtgatagttgtccagattggttaaccttcaattgtgaaggttctt 435  Q
    |||| ||||| |||||||||||||||||||||| |||||||||||||| ||||| |||| |||| ||||||||||||||||||| ||| |||||||||||    
T  5242907 ttttcactttaacagaatatggatgagaatgggagtggtggttgtttgcttcctggtgacagttatccagattggttaaccttcgattctgaaggttctt 5242808  T
Q  436 cggtaacgtttgaagtccctcaagtggaagggcg 469  Q
    | || || ||||||||||||||||||||||||||    
T  5242807 ctgttacttttgaagtccctcaagtggaagggcg 5242774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 347 - 469
Target Start/End: Original strand, 5345940 - 5346062
Alignment:
Q  347 acagaatatggatgagaatgggtgtggtggttgtttgtttcctagtgatagttgtccagattggttaaccttcaattgtgaaggttcttcggtaacgttt 446  Q
    |||||||||||||||||||||| |||||||||||||| ||||| |||| |||| ||||||||||||||| ||||||| |||||||||||| || || |||    
T  5345940 acagaatatggatgagaatgggagtggtggttgtttgcttcctggtgacagttatccagattggttaactttcaattctgaaggttcttctgttactttt 5346039  T
Q  447 gaagtccctcaagtggaagggcg 469  Q
    ||||| |||||||||||||||||    
T  5346040 gaagttcctcaagtggaagggcg 5346062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 336 - 469
Target Start/End: Complemental strand, 5127024 - 5126891
Alignment:
Q  336 tttttacttttacagaatatggatgagaatgggtgtggtggttgtttgtttcctagtgatagttgtccagattggttaaccttcaattgtgaaggttctt 435  Q
    |||| ||||||||||||||||||||  | | ||||||||||| ||||| ||||| ||||||||| |||| |||||||| ||||||| |  ||||||||||    
T  5127024 ttttaacttttacagaatatggatgccagttggtgtggtggtagtttgcttcctggtgatagttatccatattggttagccttcaactccgaaggttctt 5126925  T
Q  436 cggtaacgtttgaagtccctcaagtggaagggcg 469  Q
    ||||||| |||||||| ||||||||| |||||||    
T  5126924 cggtaacttttgaagtacctcaagtgaaagggcg 5126891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 339 - 467
Target Start/End: Complemental strand, 5283601 - 5283473
Alignment:
Q  339 ttacttttacagaatatggatgagaatgggtgtggtggttgtttgtttcctagtgatagttgtccagattggttaaccttcaattgtgaaggttcttcgg 438  Q
    ||||||||||||||||||||||  ||| || |||||| ||||||| ||||| ||||||||| |||||||||||| ||||| | ||  ||||||||||| |    
T  5283601 ttacttttacagaatatggatgtcaataggagtggtgattgtttgcttcctggtgatagttatccagattggttgacctttagttcagaaggttcttctg 5283502  T
Q  439 taacgtttgaagtccctcaagtggaaggg 467  Q
    |||| ||||| ||||||||||| ||||||    
T  5283501 taacttttgatgtccctcaagttgaaggg 5283473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 338 - 469
Target Start/End: Complemental strand, 5156403 - 5156272
Alignment:
Q  338 tttacttttacagaatatggatgagaatgggtgtggtggttgtttgtttcctagtgatagttgtccagattggttaaccttcaattgtgaaggttcttcg 437  Q
    ||||||||| |||||||||||||  |||||| |||||||||||||  | || |||||||||| |||| ||||||||||||  |||| ||||||||||||     
T  5156403 tttacttttccagaatatggatggcaatgggagtggtggttgtttcctccccagtgatagttatccaaattggttaacctataattctgaaggttcttct 5156304  T
Q  438 gtaacgtttgaagtccctcaagtggaagggcg 469  Q
    || |  |||||||| |||||||||||||||||    
T  5156303 gtgaaatttgaagttcctcaagtggaagggcg 5156272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 371 - 465
Target Start/End: Original strand, 5448547 - 5448641
Alignment:
Q  371 tggtggttgtttgtttcctagtgatagttgtccagattggttaaccttcaattgtgaaggttcttcggtaacgtttgaagtccctcaagtggaag 465  Q
    ||||||||||||  ||||  ||||||||| |||||||||||||||||| |||| |||||||||||| ||||| ||||||||||||||||||||||    
T  5448547 tggtggttgtttccttcccggtgatagttatccagattggttaacctttaattctgaaggttcttctgtaacttttgaagtccctcaagtggaag 5448641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 342 - 469
Target Start/End: Original strand, 5438920 - 5439047
Alignment:
Q  342 cttttacagaatatggatgagaatgggtgtggtggttgtttgtttcctagtgatagttgtccagattggttaaccttcaattgtgaaggttcttcggtaa 441  Q
    |||| ||||||||||||||  |||||| ||| |||| ||||  | ||  ||||||||| |||| ||||||||||||| |||| |||||||||||| ||||    
T  5438920 ctttcacagaatatggatgtcaatgggagtgatggtcgttttctccccggtgatagttatccaaattggttaacctttaattctgaaggttcttctgtaa 5439019  T
Q  442 cgtttgaagtccctcaagtggaagggcg 469  Q
    | ||| ||||||||||||||||||||||    
T  5439020 cttttcaagtccctcaagtggaagggcg 5439047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 370 - 469
Target Start/End: Complemental strand, 5101176 - 5101077
Alignment:
Q  370 gtggtggttgtttgtttcctagtgatagttgtccagattggttaaccttcaattgtgaaggttcttcggtaacgtttgaagtccctcaagtggaagggcg 469  Q
    |||||||||||||| ||||| ||||||||| |||| |||||||||||||   ||  ||||||||||| ||||| || |||||||||||||||||||||||    
T  5101176 gtggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttcttctgtaactttagaagtccctcaagtggaagggcg 5101077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 370 - 469
Target Start/End: Complemental strand, 5136277 - 5136178
Alignment:
Q  370 gtggtggttgtttgtttcctagtgatagttgtccagattggttaaccttcaattgtgaaggttcttcggtaacgtttgaagtccctcaagtggaagggcg 469  Q
    |||||||||||||| ||||| ||||||||| |||| |||||||||||||   ||  ||||||||||| ||||| || |||||||||||||||||||||||    
T  5136277 gtggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttcttctgtaactttagaagtccctcaagtggaagggcg 5136178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 338 - 469
Target Start/End: Complemental strand, 5353253 - 5353122
Alignment:
Q  338 tttacttttacagaatatggatgagaatgggtgtggtggttgtttgtttcctagtgatagttgtccagattggttaaccttcaattgtgaaggttcttcg 437  Q
    |||||||| ||||||||||||||  |||||  |||||||||||||  | ||| ||||||||| |||| |||||||||||||| | | ||||||||||||     
T  5353253 tttactttcacagaatatggatgttaatggaagtggtggttgtttcctccctggtgatagttatccaaattggttaaccttctactctgaaggttcttct 5353154  T
Q  438 gtaacgtttgaagtccctcaagtggaagggcg 469  Q
    ||||| ||| | |||||||  |||||||||||    
T  5353153 gtaacttttcatgtccctctggtggaagggcg 5353122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 346 - 466
Target Start/End: Original strand, 5098124 - 5098244
Alignment:
Q  346 tacagaatatggatgagaatgggtgtggtggttgtttgtttcctagtgatagttgtccagattggttaaccttcaattgtgaaggttcttcggtaacgtt 445  Q
    ||||||||||||||   |||||| | |||| ||||||| |||| | |||| ||| ||||||||||||||||||  ||| |||||||||||||||||| ||    
T  5098124 tacagaatatggatctcaatgggagcggtgattgtttgcttcccactgatggttatccagattggttaacctttcattctgaaggttcttcggtaacttt 5098223  T
Q  446 tgaagtccctcaagtggaagg 466  Q
    | |||| || |||||||||||    
T  5098224 tcaagttccccaagtggaagg 5098244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 333 - 455
Target Start/End: Complemental strand, 5181169 - 5181047
Alignment:
Q  333 ctgtttttacttttacagaatatggatgagaatgggtgtggtggttgtttgtttcctagtgatagttgtccagattggttaaccttcaattgtgaaggtt 432  Q
    |||| ||||| || ||||||||||||||  ||||   ||||||||| |||  | || |||||||||| |||| ||||||||||||| |||| ||||||||    
T  5181169 ctgtctttacattcacagaatatggatgtcaatgaaagtggtggttatttcctccccagtgatagttatccaaattggttaacctttaattctgaaggtt 5181070  T
Q  433 cttcggtaacgtttgaagtccct 455  Q
    |||| ||||| ||||||||||||    
T  5181069 cttctgtaacttttgaagtccct 5181047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 338 - 467
Target Start/End: Original strand, 5334087 - 5334213
Alignment:
Q  338 tttacttttacagaatatggatgagaatgggtgtggtggttgtttgtttcctagtgatagttgtccagattggttaaccttcaattgtgaaggttcttcg 437  Q
    |||| |||| |||||||||||||  |||||| |||||||||||||    || |||||||||| |||| ||||||||| ||  |||| ||||||||||||     
T  5334087 tttaattttccagaatatggatggcaatgggagtggtggttgtttc---cccagtgatagttatccaaattggttaagctataattctgaaggttcttct 5334183  T
Q  438 gtaacgtttgaagtccctcaagtggaaggg 467  Q
    || |  |||||||| |||||||||||||||    
T  5334184 gtgaaatttgaagttcctcaagtggaaggg 5334213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 343 - 469
Target Start/End: Original strand, 5351310 - 5351436
Alignment:
Q  343 ttttacagaatatggatgagaatgggtgtggtggttgtttgtttcctagtgatagttgtccagattggttaaccttcaattgtgaaggttcttcggtaac 442  Q
    |||| ||||||||||||   ||| || || ||||||||||| ||||| ||||||||| |||| ||||||||||||| | ||  |||| |||||| || |     
T  5351310 ttttgcagaatatggatctcaataggagtagtggttgtttgcttcctggtgatagttatccaaattggttaacctttatttcagaagtttcttctgtgaa 5351409  T
Q  443 gtttgaagtccctcaagtggaagggcg 469  Q
     |||||||| |||||||||||||||||    
T  5351410 atttgaagttcctcaagtggaagggcg 5351436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 469
Target Start/End: Original strand, 5372012 - 5372133
Alignment:
Q  348 cagaatatggatgagaatgggtgtggtggttgtttgtttcctagtgatagttgtccagattggttaaccttcaattgtgaaggttcttcggtaacgtttg 447  Q
    |||||||||||||  || ||| |||||||||||||  | || | |||||||| |||| ||||||||||||  | || |||||||||||| || |  ||||    
T  5372012 cagaatatggatggcaacgggagtggtggttgtttcctccccaatgatagttatccaaattggttaacctatagttctgaaggttcttctgtgaaatttg 5372111  T
Q  448 aagtccctcaagtggaagggcg 469  Q
    |||| |||||||||||||||||    
T  5372112 aagttcctcaagtggaagggcg 5372133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 328 - 375
Target Start/End: Original strand, 5253465 - 5253512
Alignment:
Q  328 tgagtctgtttttacttttacagaatatggatgagaatgggtgtggtg 375  Q
    ||||||| |||| ||||||||||||||||||||||||||| |||||||    
T  5253465 tgagtctattttcacttttacagaatatggatgagaatggatgtggtg 5253512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 469
Target Start/End: Original strand, 5426810 - 5426936
Alignment:
Q  343 ttttacagaatatggatgagaatgggtgtggtggttgtttgtttcctagtgatagttgtccagattggttaaccttcaattgtgaaggttcttcggtaac 442  Q
    |||| ||||||||||||   ||| || ||||| ||| |||| ||||| |||| |||| |||| | ||||||||||  | || |||||||||||| |||||    
T  5426810 ttttgcagaatatggatctcaataggagtggtagttttttgcttcctggtgacagttatccaaagtggttaacctatagttctgaaggttcttctgtaac 5426909  T
Q  443 gtttgaagtccctcaagtggaagggcg 469  Q
     ||| |||| || ||||||||||||||    
T  5426910 ttttcaagttccacaagtggaagggcg 5426936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 412 - 469
Target Start/End: Original strand, 5253525 - 5253582
Alignment:
Q  412 taaccttcaattgtgaaggttcttcggtaacgtttgaagtccctcaagtggaagggcg 469  Q
    |||| |||||||||||||||||||| ||| | ||| ||||||||||| ||||||||||    
T  5253525 taactttcaattgtgaaggttcttctgtaccttttaaagtccctcaattggaagggcg 5253582  T

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Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 380 - 469
Target Start/End: Complemental strand, 5256498 - 5256409
Alignment:
Q  380 tttgtttcctagtgatagttgtccagattggttaaccttcaattgtgaaggttcttcggtaacgtttgaagtccctcaagtggaagggcg 469  Q
    |||| ||||| ||||||||  |||| ||||||||||||  | || |||||||||||| ||||| |||||||||||  |||| ||||||||    
T  5256498 tttgcttcctggtgatagtcatccaaattggttaacctatagttctgaaggttcttctgtaacttttgaagtccccgaagttgaagggcg 5256409  T

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Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 469
Target Start/End: Original strand, 5397951 - 5398082
Alignment:
Q  338 tttacttttacagaatatggatgagaatgggtgtggtggttgtttgtttcctagtgatagttgtccagattggttaaccttcaattgtgaaggttcttcg 437  Q
    |||||||||  ||||||| ||||  ||||||  ||||||||||||  | || || ||||||| |||| |||||||||| |  | || ||| ||||||||     
T  5397951 tttacttttctagaatatcgatggcaatgggaatggtggttgtttcctccccagcgatagttatccaaattggttaacttatagttctgagggttcttct 5398050  T
Q  438 gtaacgtttgaagtccctcaagtggaagggcg 469  Q
     |||| |||||||| ||||| |||||||||||    
T  5398051 ttaacttttgaagttcctcatgtggaagggcg 5398082  T

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Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 419 - 469
Target Start/End: Complemental strand, 5065761 - 5065711
Alignment:
Q  419 caattgtgaaggttcttcggtaacgtttgaagtccctcaagtggaagggcg 469  Q
    |||||| ||||||||||| ||||| ||||||||||||||| || |||||||    
T  5065761 caattgcgaaggttcttctgtaacttttgaagtccctcaaatgaaagggcg 5065711  T

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Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 429 - 471
Target Start/End: Complemental strand, 5072981 - 5072939
Alignment:
Q  429 ggttcttcggtaacgtttgaagtccctcaagtggaagggcgca 471  Q
    |||| ||||||||  ||||||||||||||||||||||||||||    
T  5072981 ggttgttcggtaaaatttgaagtccctcaagtggaagggcgca 5072939  T

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Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 5177342 - 5177375
Alignment:
Q  31 ttaaaaacttgcatctaatgtaagtctgctgaat 64  Q
    ||||||||||||||||||||||| ||||||||||    
T  5177342 ttaaaaacttgcatctaatgtaattctgctgaat 5177375  T

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Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 338 - 464
Target Start/End: Complemental strand, 47985783 - 47985657
Alignment:
Q  338 tttacttttacagaatatggatgagaatgggtgtggtggttgtttgtttcctagtgatagttgtccagattggttaaccttcaattgtgaaggttcttcg 437  Q
    |||||||||||||||||||| ||  |||||| ||| | |||||||| | ||| ||||||||| |||| ||||||||||||| |||| |||||||||||||    
T  47985783 tttacttttacagaatatggctgttaatgggagtgattgttgtttgctccctggtgatagttatccaaattggttaacctttaattctgaaggttcttcg 47985684  T
Q  438 gtaacgtttgaagtccctcaagtggaa 464  Q
    ||||| |||||||||||||||||||||    
T  47985683 gtaacttttgaagtccctcaagtggaa 47985657  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 338 - 464
Target Start/End: Complemental strand, 47995070 - 47994944
Alignment:
Q  338 tttacttttacagaatatggatgagaatgggtgtggtggttgtttgtttcctagtgatagttgtccagattggttaaccttcaattgtgaaggttcttcg 437  Q
    |||||||||||||||||||| ||  |||||| ||| | |||||||| | ||| ||||||||| |||| ||||||||||||| |||| |||||||||||||    
T  47995070 tttacttttacagaatatggctgttaatgggagtgattgttgtttgctccctggtgatagttatccaaattggttaacctttaattctgaaggttcttcg 47994971  T
Q  438 gtaacgtttgaagtccctcaagtggaa 464  Q
    ||||| |||||||||||||||||||||    
T  47994970 gtaacttttgaagtccctcaagtggaa 47994944  T

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Target: chr3; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 338 - 464
Target Start/End: Complemental strand, 48004357 - 48004231
Alignment:
Q  338 tttacttttacagaatatggatgagaatgggtgtggtggttgtttgtttcctagtgatagttgtccagattggttaaccttcaattgtgaaggttcttcg 437  Q
    |||||||||||||||||||| ||  |||||| ||| | |||||||| | ||| ||||||||| |||| ||||||||||||| |||| |||||||||||||    
T  48004357 tttacttttacagaatatggctgttaatgggagtgattgttgtttgctccctggtgatagttatccaaattggttaacctttaattctgaaggttcttcg 48004258  T
Q  438 gtaacgtttgaagtccctcaagtggaa 464  Q
    ||||| |||||||||||||||||||||    
T  48004257 gtaacttttgaagtccctcaagtggaa 48004231  T

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Target: chr3; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 338 - 464
Target Start/End: Complemental strand, 48013642 - 48013516
Alignment:
Q  338 tttacttttacagaatatggatgagaatgggtgtggtggttgtttgtttcctagtgatagttgtccagattggttaaccttcaattgtgaaggttcttcg 437  Q
    |||||||||||||||||||| ||  |||||| ||| | |||||||| | ||| ||||||||| |||| ||||||||||||| |||| |||||||||||||    
T  48013642 tttacttttacagaatatggctgttaatgggagtgattgttgtttgctccctggtgatagttatccaaattggttaacctttaattctgaaggttcttcg 48013543  T
Q  438 gtaacgtttgaagtccctcaagtggaa 464  Q
    ||||| |||||||||||||||||||||    
T  48013542 gtaacttttgaagtccctcaagtggaa 48013516  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 463
Target Start/End: Complemental strand, 36213278 - 36213186
Alignment:
Q  371 tggtggttgtttgtttcctagtgatagttgtccagattggttaaccttcaattgtgaaggttcttcggtaacgtttgaagtccctcaagtgga 463  Q
    ||||||||||||| | ||| |||||  || ||| ||||||||||||||||||||  |||||||||| ||||  ||||| ||||||| ||||||    
T  36213278 tggtggttgtttgctccctggtgatcattatcctgattggttaaccttcaattgcaaaggttcttctgtaatttttgatgtccctcgagtgga 36213186  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 466
Target Start/End: Complemental strand, 4319625 - 4319564
Alignment:
Q  405 gattggttaaccttcaattgtgaaggttcttcggtaacgtttgaagtccctcaagtggaagg 466  Q
    ||||||||| | |||||||  ||||||||||| ||||  |||||||||||||||||||||||    
T  4319625 gattggttagctttcaattcagaaggttcttctgtaatttttgaagtccctcaagtggaagg 4319564  T

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Target: scaffold0294 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 465
Target Start/End: Complemental strand, 8211 - 8137
Alignment:
Q  391 gtgatagttgtccagattggttaaccttcaattgtgaaggttcttcggtaacgtttgaagtccctcaagtggaag 465  Q
    ||||||||| |||| | ||||||| |||||||||||| |||||||| ||||  ||| | | ||||||||||||||    
T  8211 gtgatagttatccaaactggttaagcttcaattgtgatggttcttctgtaatttttaatgcccctcaagtggaag 8137  T

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