View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6092_high_10 (Length: 237)
Name: NF6092_high_10
Description: NF6092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6092_high_10 |
 | |
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| [»] chr1 (2 HSPs) |
| |
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| [»] chr3 (7 HSPs) |
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| [»] chr7 (6 HSPs) |
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| [»] scaffold0168 (1 HSPs) |
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| [»] scaffold0012 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr2 (4 HSPs) |
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| [»] scaffold0015 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 17126965 - 17127201
Alignment:
| Q |
1 |
caaactcttatatgtgatatgtttatatgttatcttttgtataaactttcagagatgaggaggtttttagttgatagaacatggatttagtgaagagatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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|
| T |
17126965 |
caaactcttatatgtgatatgtttatatgttatcttttgtataaactttcagagatgaggaggtttttggttgatagaacatcgatttagtgaagagatg |
17127064 |
T |
|
| Q |
101 |
gatcatcgatttagtgaaggaagtaacattgtacttgattgcttctcatgtcttgatcccaaaatcgctttctccaagtttgatgttgataagcttgctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||| |
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|
| T |
17127065 |
gatcatcgatttagtgaaggaagtaacattgtacttgattgcttctcatgtcttgatcccaaaaactctttctccaaatttgatgttgataagcttgctc |
17127164 |
T |
|
| Q |
201 |
gtctttctgatatttatcatgcagacttttctgatga |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17127165 |
gtctttctgatatttatcatgcagacttttctgatga |
17127201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 95 - 237
Target Start/End: Complemental strand, 21974343 - 21974201
Alignment:
| Q |
95 |
gagatggatcatcgatttagtgaaggaagtaacattgtacttgattgcttctcatgtcttgatcccaaaatcgctttctccaagtttgatgttgataagc |
194 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| | | |||||||||| |||||||||||||||| |
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|
| T |
21974343 |
gagatggatcatcgctttagtgaaggaagtaacattgtccttgattgcttctcatgtcttgaccccaagaactctttctccaaatttgatgttgataagc |
21974244 |
T |
|
| Q |
195 |
ttgctcgtctttctgatatttatcatgcagacttttctgatga |
237 |
Q |
| |
|
|||||| |||| |||||||||||||||| |||||||||||||| |
|
|
| T |
21974243 |
ttgctcatcttgctgatatttatcatgctgacttttctgatga |
21974201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 24909042 - 24908806
Alignment:
| Q |
1 |
caaactcttatatgtgatatgtttatatgttatcttttgtataaactttcagagatgaggaggtttttagttgatagaacatggatttagtgaagagatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
24909042 |
caaactcttatatgtgatatgtttatatgttatcttttgtataaactttcagagattatgagatttttggttgatagaacatcgatttagtgaagagatg |
24908943 |
T |
|
| Q |
101 |
gatcatcgatttagtgaaggaagtaacattgtacttgattgcttctcatgtcttgatcccaaaatcgctttctccaagtttgatgttgataagcttgctc |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||| |
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|
| T |
24908942 |
gattatcgatttagtgaaggaagtaacattatacttgattgcttctcatgtcttgattccaaaaactttttctccaagtttgatgttgataagcttgctc |
24908843 |
T |
|
| Q |
201 |
gtctttctgatatttatcatgcagacttttctgatga |
237 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24908842 |
gtcttgctgatatttatcatgcagacttttctgatga |
24908806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 95 - 237
Target Start/End: Original strand, 31988649 - 31988791
Alignment:
| Q |
95 |
gagatggatcatcgatttagtgaaggaagtaacattgtacttgattgcttctcatgtcttgatcccaaaatcgctttctccaagtttgatgttgataagc |
194 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
31988649 |
gagatggatcatcgctttagtgaaggaagtaacattgtacttgattgcttctcatgtcttgatcccaaaaactctttctccaagtttgatgttgataagc |
31988748 |
T |
|
| Q |
195 |
ttgctcgtctttctgatatttatcatgcagacttttctgatga |
237 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
31988749 |
ttgctcgtcttgctgatatttatcatgtagacttttctgatga |
31988791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 95 - 237
Target Start/End: Original strand, 53710018 - 53710160
Alignment:
| Q |
95 |
gagatggatcatcgatttagtgaaggaagtaacattgtacttgattgcttctcatgtcttgatcccaaaatcgctttctccaagtttgatgttgataagc |
194 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
53710018 |
gagatggatcatcgctttagtgaaggaagtaacattgtacttgattgcttctcatgtcttgatcccaaaaactctttctccaagtttgatgttgataagc |
53710117 |
T |
|
| Q |
195 |
ttgctcgtctttctgatatttatcatgcagacttttctgatga |
237 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
53710118 |
ttgctcgtcttgctgatatttatcatgtagacttttctgatga |
53710160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 95 - 221
Target Start/End: Original strand, 43136822 - 43136948
Alignment:
| Q |
95 |
gagatggatcatcgatttagtgaaggaagtaacattgtacttgattgcttctcatgtcttgatcccaaaatcgctttctccaagtttgatgttgataagc |
194 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||| | ||||||||||||||||||||||||||| |
|
|
| T |
43136822 |
gagatggatcaccgctttagtgaaggaagtaacattgtgcttgactgcttttcatgtcttgaccccaagaattctttctccaagtttgatgttgataagc |
43136921 |
T |
|
| Q |
195 |
ttgctcgtctttctgatatttatcatg |
221 |
Q |
| |
|
|||||||| || | |||||||||||| |
|
|
| T |
43136922 |
ttgctcgttttgcaaatatttatcatg |
43136948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 43585745 - 43585801
Alignment:
| Q |
25 |
atatgttatcttttgtataaactttcagagatgaggaggtttttagttgatagaaca |
81 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
43585745 |
atatgttattttctgtataaactttcagagatgaggagatttttggttgatagaaca |
43585801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 31986637 - 31986693
Alignment:
| Q |
25 |
atatgttatcttttgtataaactttcagagatgaggaggtttttagttgatagaaca |
81 |
Q |
| |
|
|||| ||||||| |||||||| |||||||||||||||| ||||| |||||||||||| |
|
|
| T |
31986637 |
atatattatcttctgtataaaatttcagagatgaggagatttttggttgatagaaca |
31986693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 53707952 - 53708008
Alignment:
| Q |
25 |
atatgttatcttttgtataaactttcagagatgaggaggtttttagttgatagaaca |
81 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||| | ||||| |||||||||||| |
|
|
| T |
53707952 |
atatattatcttctgtataaactttcagagatgagaaaatttttggttgatagaaca |
53708008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 23 - 237
Target Start/End: Original strand, 19399526 - 19399740
Alignment:
| Q |
23 |
ttatatgttatcttttgtataaactttcagagatgaggaggtttttagttgatagaacatggatttagtgaagagatggatcatcgatttagtgaaggaa |
122 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19399526 |
ttatatgttatcttttgtataaactttcggaaatgaggagttttttggttgatagaacatcgatttagtgaagagatggatcatcgatttagtgaaggaa |
19399625 |
T |
|
| Q |
123 |
gtaacattgtacttgattgcttctcatgtcttgatcccaaaatcgctttctccaagtttgatgttgataagcttgctcgtctttctgatatttatcatgc |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19399626 |
gtaacattgtacttgattgcttctcatgtcttgatcccaaaaactctttctccaaatttgatgttgataagcttgctcgtctttctgatatttatcatgc |
19399725 |
T |
|
| Q |
223 |
agacttttctgatga |
237 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
19399726 |
agacttttctgatga |
19399740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 95 - 237
Target Start/End: Complemental strand, 38575844 - 38575702
Alignment:
| Q |
95 |
gagatggatcatcgatttagtgaaggaagtaacattgtacttgattgcttctcatgtcttgatcccaaaatcgctttctccaagtttgatgttgataagc |
194 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | ||||||||||||||||||||||||| |
|
|
| T |
38575844 |
gagatggatcatcgctttagtgaaggaagtaacattgtacttgattgcttctcatgtcttgatcccaagaactccttctccaagtttgatgttgataagc |
38575745 |
T |
|
| Q |
195 |
ttgctcgtctttctgatatttatcatgcagacttttctgatga |
237 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38575744 |
ttgctcttcttgctgatatttatcatgcagacttttctgatga |
38575702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 95 - 237
Target Start/End: Complemental strand, 27387861 - 27387719
Alignment:
| Q |
95 |
gagatggatcatcgatttagtgaaggaagtaacattgtacttgattgcttctcatgtcttgatcccaaaatcgctttctccaagtttgatgttgataagc |
194 |
Q |
| |
|
|||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||| |
|
|
| T |
27387861 |
gagatggatcatcgctttagggaaagaagtaacattgtacttgattgcttctcatgtcttgattccaaaaactctttctccaagtttgatgttgataagc |
27387762 |
T |
|
| Q |
195 |
ttgctcgtctttctgatatttatcatgcagacttttctgatga |
237 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
27387761 |
ttgctcgtcttgctgatatttatcatgtagacttttctgatga |
27387719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 95 - 237
Target Start/End: Complemental strand, 26494269 - 26494127
Alignment:
| Q |
95 |
gagatggatcatcgatttagtgaaggaagtaacattgtacttgattgcttctcatgtcttgatcccaaaatcgctttctccaagtttgatgttgataagc |
194 |
Q |
| |
|
|||||||||||||| || |||||||||||| ||| ||| ||| ||||||||||||||||||| ||||| | | |||||| |||||||||||||||||||| |
|
|
| T |
26494269 |
gagatggatcatcgcttcagtgaaggaagtcacactgtgcttaattgcttctcatgtcttgaccccaagaactctttcttcaagtttgatgttgataagc |
26494170 |
T |
|
| Q |
195 |
ttgctcgtctttctgatatttatcatgcagacttttctgatga |
237 |
Q |
| |
|
||||||||||| ||||||| ||||||||||| |||||| |||| |
|
|
| T |
26494169 |
ttgctcgtcttgctgatatatatcatgcagatttttctaatga |
26494127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 34224562 - 34224506
Alignment:
| Q |
25 |
atatgttatcttttgtataaactttcagagatgaggaggtttttagttgatagaaca |
81 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||| ||||||| |||| |
|
|
| T |
34224562 |
atatgttatcttttgtataaactttaagagatgaggaagtttttggttgataaaaca |
34224506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 38577907 - 38577851
Alignment:
| Q |
25 |
atatgttatcttttgtataaactttcagagatgaggaggtttttagttgatagaaca |
81 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||| ||||| ||| |||||||| |
|
|
| T |
38577907 |
atatattatcttccgtataaactttcagagatgaggagatttttggttaatagaaca |
38577851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0168 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0168
Description:
Target: scaffold0168; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 95 - 237
Target Start/End: Original strand, 15434 - 15576
Alignment:
| Q |
95 |
gagatggatcatcgatttagtgaaggaagtaacattgtacttgattgcttctcatgtcttgatcccaaaatcgctttctccaagtttgatgttgataagc |
194 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| | | |||||||||| |||||||||||||||| |
|
|
| T |
15434 |
gagatggatcatcgctttagtgaaggaagtaacattgtccttgattgcttctcatgtcttgaccccaagaactctttctccaaatttgatgttgataagc |
15533 |
T |
|
| Q |
195 |
ttgctcgtctttctgatatttatcatgcagacttttctgatga |
237 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
15534 |
ttgctcgtcttgctgatatttatcatgctgacttttctgatga |
15576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 95 - 237
Target Start/End: Original strand, 196725 - 196867
Alignment:
| Q |
95 |
gagatggatcatcgatttagtgaaggaagtaacattgtacttgattgcttctcatgtcttgatcccaaaatcgctttctccaagtttgatgttgataagc |
194 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| | | |||||||||| |||||||||||||||| |
|
|
| T |
196725 |
gagatggatcatcgctttagtgaaggaagtaacattgtccttgattgcttctcatgtcttgaccccaagaactctttctccaaatttgatgttgataagc |
196824 |
T |
|
| Q |
195 |
ttgctcgtctttctgatatttatcatgcagacttttctgatga |
237 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
196825 |
ttgctcgtcttgctgatatttatcatgctgacttttctgatga |
196867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 95 - 237
Target Start/End: Complemental strand, 26541210 - 26541068
Alignment:
| Q |
95 |
gagatggatcatcgatttagtgaaggaagtaacattgtacttgattgcttctcatgtcttgatcccaaaatcgctttctccaagtttgatgttgataagc |
194 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| | | |||||||||| |||||||||||||||| |
|
|
| T |
26541210 |
gagatggatcatcgctttagtgaaggaagtaacattgtccttgattgcttctcatgtcttgaccccaagaactctttctccaaatttgatgttgataagc |
26541111 |
T |
|
| Q |
195 |
ttgctcgtctttctgatatttatcatgcagacttttctgatga |
237 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
26541110 |
ttgctcgtcttgctgatatttatcatgctgacttttctgatga |
26541068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 95 - 237
Target Start/End: Original strand, 203506 - 203648
Alignment:
| Q |
95 |
gagatggatcatcgatttagtgaaggaagtaacattgtacttgattgcttctcatgtcttgatcccaaaatcgctttctccaagtttgatgttgataagc |
194 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| | |||||| |||||||||||||||||||| |
|
|
| T |
203506 |
gagatggatcatcgctttagtgaaggaagtaacattgtgcttgattgcttctcatgtcttgaccccaagaattctttctacaagtttgatgttgataagc |
203605 |
T |
|
| Q |
195 |
ttgctcgtctttctgatatttatcatgcagacttttctgatga |
237 |
Q |
| |
|
|| || ||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
203606 |
ttcctggtcttactgatatttatcatgcagacttatctgatga |
203648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 9e-54; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 95 - 237
Target Start/End: Original strand, 34525972 - 34526114
Alignment:
| Q |
95 |
gagatggatcatcgatttagtgaaggaagtaacattgtacttgattgcttctcatgtcttgatcccaaaatcgctttctccaagtttgatgttgataagc |
194 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| | | |||||||||| |||||||||||||||| |
|
|
| T |
34525972 |
gagatggatcatcgctttagtgaaggaagtaacattgtccttgattgcttctcatgtcttgaccccaagaactctttctccaaatttgatgttgataagc |
34526071 |
T |
|
| Q |
195 |
ttgctcgtctttctgatatttatcatgcagacttttctgatga |
237 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
34526072 |
ttgctcgtcttgctgatatttatcatgctgacttttctgatga |
34526114 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 95 - 237
Target Start/End: Original strand, 22464290 - 22464432
Alignment:
| Q |
95 |
gagatggatcatcgatttagtgaaggaagtaacattgtacttgattgcttctcatgtcttgatcccaaaatcgctttctccaagtttgatgttgataagc |
194 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| | | |||||||||| |||||||||||||||| |
|
|
| T |
22464290 |
gagatggatcatcgctttagtgaaggaagtaacattgtccttgattgcttctcatgtcttgaccccaagaactctttctccaaatttgatgttgataagc |
22464389 |
T |
|
| Q |
195 |
ttgctcgtctttctgatatttatcatgcagacttttctgatga |
237 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
22464390 |
ttgctcgtcttgctgatatttatcatgttgacttttctgatga |
22464432 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 95 - 236
Target Start/End: Complemental strand, 35650212 - 35650071
Alignment:
| Q |
95 |
gagatggatcatcgatttagtgaaggaagtaacattgtacttgattgcttctcatgtcttgatcccaaaatcgctttctccaagtttgatgttgataagc |
194 |
Q |
| |
|
||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||| ||||| | | ||||||||||||||||| ||||||| |
|
|
| T |
35650212 |
gagatggatcaccgctttagcgaaggaagtaacattgtgtttgattgcttctcatgtcttgaccccaagaaccttttctccaagtttgatgctgataagt |
35650113 |
T |
|
| Q |
195 |
ttgctcgtctttctgatatttatcatgcagacttttctgatg |
236 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
35650112 |
ttgctcatcttgctgatatttatcatgcagacttttctgatg |
35650071 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 96 - 237
Target Start/End: Complemental strand, 33453743 - 33453602
Alignment:
| Q |
96 |
agatggatcatcgatttagtgaaggaagtaacattgtacttgattgcttctcatgtcttgatcccaaaatcgctttctccaagtttgatgttgataagct |
195 |
Q |
| |
|
|||||||||| || ||| ||||||||||||||| ||| |||||||| ||| ||||||||| |||| | | |||||||||||||| ||||||||||||| |
|
|
| T |
33453743 |
agatggatcaccgcttttgtgaaggaagtaacaatgtgcttgattgtctcttatgtcttgactccaagaactctttctccaagtttaatgttgataagct |
33453644 |
T |
|
| Q |
196 |
tgctcgtctttctgatatttatcatgcagacttttctgatga |
237 |
Q |
| |
|
|| ||||||| ||||||||||||||||| || ||||| |||| |
|
|
| T |
33453643 |
tgttcgtcttgctgatatttatcatgcaaacatttctaatga |
33453602 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 21946625 - 21946744
Alignment:
| Q |
1 |
caaactcttatatgtgatatgtttatatgttatcttttgtataaactttcagagatgaggaggtttttagttgatagaacatggatttagtgaagagatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||| ||||| |
|
|
| T |
21946625 |
caaactcttatatgtgatatgtttatatgttatcttttgtataaacttttagagatgaggaggtttttggttgatagaacatcgatttagtgaaaagatg |
21946724 |
T |
|
| Q |
101 |
gatcatcgatttagtgaagg |
120 |
Q |
| |
|
||| |||||||||||||||| |
|
|
| T |
21946725 |
gattatcgatttagtgaagg |
21946744 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 95 - 237
Target Start/End: Complemental strand, 30792013 - 30791871
Alignment:
| Q |
95 |
gagatggatcatcgatttagtgaaggaagtaacattgtacttgattgcttctcatgtcttgatcccaaaatcgctttctccaagtttgatgttgataagc |
194 |
Q |
| |
|
|||||||||||||| |||||||||| ||| |||||||| |||||||| |||||||||||||| ||||| | | ||||||||||||||||||||||||||| |
|
|
| T |
30792013 |
gagatggatcatcgctttagtgaagaaagcaacattgtccttgattgtttctcatgtcttgaccccaagaactctttctccaagtttgatgttgataagc |
30791914 |
T |
|
| Q |
195 |
ttgctcgtctttctgatatttatcatgcagacttttctgatga |
237 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
30791913 |
ttgctcgtcttgctgatatttatcatgctgacttttctgatga |
30791871 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 119 - 237
Target Start/End: Original strand, 21958156 - 21958274
Alignment:
| Q |
119 |
ggaagtaacattgtacttgattgcttctcatgtcttgatcccaaaatcgctttctccaagtttgatgttgataagcttgctcgtctttctgatatttatc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| | ||| ||||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21958156 |
ggaagtaacattgtacttgattgcttctcatgtcttgattccaaaaactcttcctccaagttcgatgttgataagcttgctcgtcttgctgatatttatc |
21958255 |
T |
|
| Q |
219 |
atgcagacttttctgatga |
237 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
21958256 |
atgcagacttttctgatga |
21958274 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 119 - 237
Target Start/End: Complemental strand, 214692 - 214574
Alignment:
| Q |
119 |
ggaagtaacattgtacttgattgcttctcatgtcttgatcccaaaatcgctttctccaagtttgatgttgataagcttgctcgtctttctgatatttatc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| | ||| ||||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
214692 |
ggaagtaacattgtacttgattgcttctcatgtcttgattccaaaaactcttcctccaagttcgatgttgataagcttgctcgtcttgctgatatttatc |
214593 |
T |
|
| Q |
219 |
atgcagacttttctgatga |
237 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
214592 |
atgcagacttttctgatga |
214574 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 95 - 237
Target Start/End: Original strand, 27364503 - 27364645
Alignment:
| Q |
95 |
gagatggatcatcgatttagtgaaggaagtaacattgtacttgattgcttctcatgtcttgatcccaaaatcgctttctccaagtttgatgttgataagc |
194 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| || || | | |||||| |||||||||||||||||| | |
|
|
| T |
27364503 |
gagatggatcatcgctttagtgaaggaagtaacattgtgcttaattgcttctcatgtcttgaccctaagaactctttcttcaagtttgatgttgataaac |
27364602 |
T |
|
| Q |
195 |
ttgctcgtctttctgatatttatcatgcagacttttctgatga |
237 |
Q |
| |
|
||||||||||| ||||||| ||||||||||| ||||||||||| |
|
|
| T |
27364603 |
ttgctcgtcttgctgatatatatcatgcagatttttctgatga |
27364645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 95 - 233
Target Start/End: Original strand, 45195212 - 45195350
Alignment:
| Q |
95 |
gagatggatcatcgatttagtgaaggaagtaacattgtacttgattgcttctcatgtcttgatcccaaaatcgctttctccaagtttgatgttgataagc |
194 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||| ||||| | | |||||| ||||||| |||||||||||| |
|
|
| T |
45195212 |
gagagggatcatcgctttagtgaaggaagtaacattgtgcttggttgcttctcatgtcttgaccccaagaactctttcttcaagtttaatgttgataagc |
45195311 |
T |
|
| Q |
195 |
ttgctcgtctttctgatatttatcatgcagacttttctg |
233 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
45195312 |
ttgctcgtcttgctgatatttatcatgcagacttctctg |
45195350 |
T |
|
Back To:
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Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 95 - 237
Target Start/End: Original strand, 24074031 - 24074173
Alignment:
| Q |
95 |
gagatggatcatcgatttagtgaaggaagtaacattgtacttgattgcttctcatgtcttgatcccaaaatcgctttctccaagtttgatgttgataagc |
194 |
Q |
| |
|
||||||||||| || ||||||||||||| |||||||| |||||||||||||||||||| | ||||| | |||||| |||||||||||||||||||| |
|
|
| T |
24074031 |
gagatggatcaccgctttagtgaaggaattaacattgcgtttgattgcttctcatgtcttaaccccaagaattctttctacaagtttgatgttgataagc |
24074130 |
T |
|
| Q |
195 |
ttgctcgtctttctgatatttatcatgcagacttttctgatga |
237 |
Q |
| |
|
|| ||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24074131 |
ttcctccgcttactgatatttatcatgcagacttttctgatga |
24074173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 22257758 - 22257724
Alignment:
| Q |
47 |
tttcagagatgaggaggtttttagttgatagaaca |
81 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
|
|
| T |
22257758 |
tttcagagatgaggaggtttttggttgatagaaca |
22257724 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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