View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6092_high_2 (Length: 446)
Name: NF6092_high_2
Description: NF6092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6092_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 14 - 430
Target Start/End: Complemental strand, 1581550 - 1581138
Alignment:
| Q |
14 |
agataataatgtaaacagtataaaacattttgcatgcaactacttaaaactagaagaaacaactcaaacactacgtggcttgtaaaataaaatactttta |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1581550 |
agataataatgtaaacagtataaaacattttgcatgcaactacttaaaactagaagaaacaactcaaacactacgtggcttgtaaaa---aatactttta |
1581454 |
T |
|
| Q |
114 |
caagttgttcataatcaaattgaataccaatataaactcttgaggactatgtaatgtaattcttcctagctaggtaagactaattcttcaagaggctgat |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1581453 |
caagttgttcataatcaaattgaataccaatataaactcttgaggactatgtaatgtaattcttcctagctaggtaagactaattcttccagaggctgat |
1581354 |
T |
|
| Q |
214 |
actggtccatctccttataaactatttcaaagtcttcttcatcaagcttccagaatcgcataaacaaagtagagttaaatgcagaaacaaataaacaagt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1581353 |
actggtccatctccttataaactatttcaa-gtcttcttcatcaagcttccagaatcgcataaacaaagtacagttaaatgcagaaacaaataaacaagt |
1581255 |
T |
|
| Q |
314 |
ttatagctattacctaatttttgtcgagtagaaagtgcaacttgctattgaccctaaatgtccaaatgttgagtttttgaccaatttcaaaactattttg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1581254 |
ttatagctattacctaatttttgtcgagtagaaagtgcaacttgctattgaccctaaatgtccaaatgttgagtttttgaccaatttcaaaactattttg |
1581155 |
T |
|
| Q |
414 |
cctcataacatgtttcc |
430 |
Q |
| |
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||||||||||||||||| |
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| T |
1581154 |
cctcataacatgtttcc |
1581138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 14 - 430
Target Start/End: Original strand, 1603265 - 1603677
Alignment:
| Q |
14 |
agataataatgtaaacagtataaaacattttgcatgcaactacttaaaactagaagaaacaactcaaacactacgtggcttgtaaaataaaatactttta |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1603265 |
agataataatgtaaacagtataaaacattttgcatgcaactacttaaaactagaagaaacaactcaaacactacgtggcttgtaaaa---aatactttta |
1603361 |
T |
|
| Q |
114 |
caagttgttcataatcaaattgaataccaatataaactcttgaggactatgtaatgtaattcttcctagctaggtaagactaattcttcaagaggctgat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1603362 |
caagttgttcataatcaaattgaataccaatataaactcttgaggactatgtaatgtaattcttcctagctaggtaagactaattcttccagaggctgat |
1603461 |
T |
|
| Q |
214 |
actggtccatctccttataaactatttcaaagtcttcttcatcaagcttccagaatcgcataaacaaagtagagttaaatgcagaaacaaataaacaagt |
313 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1603462 |
actggtccatctccttataaactatttcaa-gtcttcttcatcaagcttccagaatcgcataaacaaagtacagttaaatgcagaaacaaataaacaagt |
1603560 |
T |
|
| Q |
314 |
ttatagctattacctaatttttgtcgagtagaaagtgcaacttgctattgaccctaaatgtccaaatgttgagtttttgaccaatttcaaaactattttg |
413 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1603561 |
ttatagctattacctaatttttgtcgagtagaaagtgcaacttgctattgaccctaaatgtccaaatgttgagtttttgaccaatttcaaaactattttg |
1603660 |
T |
|
| Q |
414 |
cctcataacatgtttcc |
430 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
1603661 |
cctcataacatgtttcc |
1603677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 286 - 412
Target Start/End: Complemental strand, 1587763 - 1587638
Alignment:
| Q |
286 |
agttaaatgcagaaacaaataaacaagtttatagctattacctaatttttgtcgagtagaaagtgcaacttgctattgaccctaaatgtccaaatgttga |
385 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| | || |||| || ||||| |||| ||||||||||||| |||||||||||| ||||| ||||||| |
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|
| T |
1587763 |
agttaaatgcagaaaataataaacgagtttataac-atcacctggttattgtcaagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttga |
1587665 |
T |
|
| Q |
386 |
gtttttgaccaatttcaaaactatttt |
412 |
Q |
| |
|
|||||| ||| ||| ||||||||||| |
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|
| T |
1587664 |
gttttttaccctttttaaaactatttt |
1587638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 1613865 - 1613920
Alignment:
| Q |
34 |
taaaacattttgcatgcaactacttaaaactagaagaaacaactcaaacactacgtg |
90 |
Q |
| |
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||||||||||| ||||| | ||||||||||||||||| ||||||||| |||||||| |
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|
| T |
1613865 |
taaaacattttttatgcagcaacttaaaactagaagaatcaactcaaa-actacgtg |
1613920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 263 - 430
Target Start/End: Original strand, 39615670 - 39615838
Alignment:
| Q |
263 |
ccagaatcgcataaacaaagtag-agttaaatgcagaaacaaataaacaagtttatagctattacctaatttttgtcgagtagaaagtgcaacttgctat |
361 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| ||| ||||||||| | |
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| T |
39615670 |
ccagaaacgcataaacaaagtactagttaaatgcagaaagaaataaacaagtttatagctattacctaattaatgttgagtacaaactgcaacttgtcct |
39615769 |
T |
|
| Q |
362 |
tgaccctaaatgtccaaatgttgagtttttgaccaatttcaaaactattttgcctcataacatgtttcc |
430 |
Q |
| |
|
|||||||||||| ||||| ||||||| ||||||| |||||||||| |||| ||||| | ||||||||| |
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| T |
39615770 |
tgaccctaaatgaccaaacgttgagtatttgacctatttcaaaaccatttcccctcacagcatgtttcc |
39615838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 289 - 412
Target Start/End: Original strand, 19270025 - 19270147
Alignment:
| Q |
289 |
taaatgcagaaacaaataaacaagtttatagctattacctaatttttgtcgagtagaaagtgcaacttgctattgaccctaaatgtccaaatgttgagtt |
388 |
Q |
| |
|
|||||||||||| ||||||| ||||||| | || |||| ||| |||||||||| ||||||||||||| |||||||||||| ||||| ||||| |||| |
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| T |
19270025 |
taaatgcagaaaataataaacgcgtttataac-atcacctgattattgtcgagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttaagtt |
19270123 |
T |
|
| Q |
389 |
tttgaccaatttcaaaactatttt |
412 |
Q |
| |
|
||| ||| ||||||||||||||| |
|
|
| T |
19270124 |
ttttacccttttcaaaactatttt |
19270147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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