View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6092_high_3 (Length: 325)
Name: NF6092_high_3
Description: NF6092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6092_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 9 - 308
Target Start/End: Original strand, 13876934 - 13877233
Alignment:
| Q |
9 |
gaagaaaatgaaaatctgaaattgtttatgacttagaacttatctatgttggagaaaatgggtcagttgttcagtggtttagatttaccacagaaagcac |
108 |
Q |
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| T |
13876934 |
gaagaatatgaaaatctgaaattgtttatgacttagaacttatctatgttggagaaaatgggtcagttgttcagtggtttagatttaccacagaaagcac |
13877033 |
T |
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| Q |
109 |
ttatatcatttgtgacttggatggtagggtataaactttcgacgtacttcaatggagaaactaaaaaggaatatgtaatgtgaatcatgtaatatgcatc |
208 |
Q |
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| T |
13877034 |
ttatatcatttgtgacttggatggtaaggtataaactttcgacgtacttcaatggagaaactaaaaaggaatatgtaatgtgaatcatgtaatatgcatc |
13877133 |
T |
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| Q |
209 |
aattctgagcgcaagttccttaatagaggttagtgtaattagtttccttttcccaaccttctcagaacattttactttgattttcataacagtgggattt |
308 |
Q |
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| T |
13877134 |
aattctgagcgcaagttccttaatagaggttagtgtaattagtttccttttcccaaccttctcagaacattttactttgattttcataacagtgggattt |
13877233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 25 - 291
Target Start/End: Original strand, 13864286 - 13864552
Alignment:
| Q |
25 |
tgaaattgtttatgacttagaacttatctatgttggagaaaatgggtcagttgttcagtggtttagatttaccacagaaagcacttatatcatttgtgac |
124 |
Q |
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| T |
13864286 |
tgaaattgtttatgacttagaacttgtctatgtgggagaaaatggttcagttgttcagtggtttagatttaccacagaaagcacttatatcatttgtgac |
13864385 |
T |
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| Q |
125 |
ttggatggtagggtataaactttcgacgtacttcaatggagaaactaaaaaggaatatgtaatgtgaatcatgtaatatgcatcaattctgagcgcaagt |
224 |
Q |
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| T |
13864386 |
ttggatggtaaggtataaactttcgacgtacttcaatggagaaactaaaaaggaatatgtaatgtgaatcatgtaatatgcatcaattctgagcgcaagt |
13864485 |
T |
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| Q |
225 |
tccttaatagaggttagtgtaattagtttccttttcccaaccttctcagaacattttactttgattt |
291 |
Q |
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| T |
13864486 |
tccttaattgaggttagtgtaattagtttccttttcccaaccttctcagaacatattactttgattt |
13864552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 200 - 287
Target Start/End: Original strand, 13895086 - 13895173
Alignment:
| Q |
200 |
atatgcatcaattctgagcgcaagttccttaatagaggttagtgtaattagtttccttttcccaaccttctcagaacattttactttg |
287 |
Q |
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| T |
13895086 |
atatgcatcaattctgagtgcaagttccttaatagagtttagtgtaattagtttcctttttccaacattctcataacattttactttg |
13895173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 13894913 - 13894966
Alignment:
| Q |
16 |
atgaaaatctgaaattgtttatgacttagaacttatctatgttggagaaaatgg |
69 |
Q |
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| T |
13894913 |
atgaaaatgtgaaattgtttatgacttataacttgtctatgttagagaatatgg |
13894966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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