View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6092_high_7 (Length: 279)
Name: NF6092_high_7
Description: NF6092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6092_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 48366404 - 48366527
Alignment:
| Q |
1 |
caatacttatgtaccaaccttgtagtggaaccaatgtaaaatttcgtcctaaggttgaacttcttcccttgagtctgtctgtctgtctatacacgttgac |
100 |
Q |
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| T |
48366404 |
caatacttatgtaccaaccttgtagtggaaccaatgtaaaatttcgtcctaaggttgaacttcttcccttgagtctgtctgtctgtctatacacgttgac |
48366503 |
T |
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| Q |
101 |
ttgattatctgttttatttttaga |
124 |
Q |
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| T |
48366504 |
tttattatctgttttatttttaga |
48366527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 159 - 273
Target Start/End: Original strand, 48366639 - 48366753
Alignment:
| Q |
159 |
accatgtgagccttcacttttcaaaacggtgtattagaaaagagaattcaaataaacttttacttatttcaaagagagaataatcaaacattttgcctta |
258 |
Q |
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| T |
48366639 |
accatgtgagccttcacttttcaaaacggtgtattagaaaagagaattcaaataaacttttacttatttcaaagagagaataatcaaacattttgcctta |
48366738 |
T |
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| Q |
259 |
tgtccatgatgatgt |
273 |
Q |
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| T |
48366739 |
tgtccatgacgatgt |
48366753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 48366550 - 48366592
Alignment:
| Q |
124 |
aaatgataaaatatataagttgttctgaggttaagaccatgtg |
166 |
Q |
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| T |
48366550 |
aaatgataaaatatataagttgttctgaggttaagaccttgtg |
48366592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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