View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6092_low_10 (Length: 301)
Name: NF6092_low_10
Description: NF6092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6092_low_10 |
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| [»] scaffold0384 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 3 - 286
Target Start/End: Original strand, 8723844 - 8724137
Alignment:
| Q |
3 |
tgttcctggtattaagaccaattggatcattcatgagtatcatgatgtcacctttgatgatccccaggtttgttttgctacattaaggttttaactttta |
102 |
Q |
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| T |
8723844 |
tgttcctggtgttaagaccaattggatcattcatgagtatcatgatgtcaccttagaggattcccaggtttgttttgttacattaaggttttaactttta |
8723943 |
T |
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| Q |
103 |
atgcttttaatatgtaacannnnnnnaaaatattctttaatcactagaaatgaaatgagtat---------tgtg-tttttcctttcaggatttgatata |
192 |
Q |
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| T |
8723944 |
atgcttttaatat-taacattttttttaaatattctttaatcactagaaatgaaatgagtatagtattgtatgtgtttttttctttcaggatttgatata |
8724042 |
T |
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| Q |
193 |
tttcttatctgataggttgttctgaaatttgaagatgtttggattcattgtttgaaaatttgattttgaacccc-ttttctcttagtgtcatatt |
286 |
Q |
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| T |
8724043 |
tttcttatctgataggctgttctgaaatttgaagatgattggattcattctttgaaaatttgattttgaacccctttttcttttagtgtcatatt |
8724137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 8740483 - 8740558
Alignment:
| Q |
1 |
cctgttcctggtattaagaccaattggatcattcatgagtatcatgatgtcacctttgatgatccccaggtttgtt |
76 |
Q |
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| T |
8740483 |
cctgttcctggtgttaagactaattggatcattcatgaatatcatgatgccatctttgatgatcaccaggtttgtt |
8740558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 259
Target Start/End: Original strand, 8722621 - 8722702
Alignment:
| Q |
176 |
tttcaggatttgatatatttcttatctgataggttgttctgaaatttgaagatgtttggattcattgtttgaaaatttgatttt |
259 |
Q |
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| T |
8722621 |
tttcaggatttgatat-tttct-atccaattggttgttctgaaatatgaagattattggatttattgtttgaaattttgatttt |
8722702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 8691129 - 8691229
Alignment:
| Q |
3 |
tgttcctggtattaagaccaattggatcattcatgagtatcatgatgtcacctttgatgatccccaggtttgttttgctacattaaggttttaactttta |
102 |
Q |
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| T |
8691129 |
tgttcctggtgttaaaagcaactgggtgattcatgaatatcattctgccacctttcatgataaccaggtttgttttgttacaacaatgtttaaactttta |
8691228 |
T |
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| Q |
103 |
a |
103 |
Q |
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| T |
8691229 |
a |
8691229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0384 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0384
Description:
Target: scaffold0384; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 7746 - 7682
Alignment:
| Q |
56 |
ttgatgatccccaggtttgttttgctacattaaggttttaacttttaatgcttttaatatgtaac |
120 |
Q |
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| T |
7746 |
ttgatgatccctaggtttgttttgttacattaaggttttgatttttaattattttaatatataac |
7682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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