View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6092_low_14 (Length: 242)
Name: NF6092_low_14
Description: NF6092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6092_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 11 - 211
Target Start/End: Complemental strand, 31501649 - 31501455
Alignment:
| Q |
11 |
catcatcattgtagcttgttcttcttgttctatggtttgtgaagttatttattcatgcaatgttacaaaatgaatgaatgagaatgagagaataaatagg |
110 |
Q |
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| T |
31501649 |
catcatcattgtagcttgttcttcttgttctatggtttgtgaagttatttattcatgcaatgttacaaaatgaatgaatgaga------gaataaatagg |
31501556 |
T |
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| Q |
111 |
taaaattctgttcggtggttttactacaaggtgtcaacaaggtgtcaagtttcaatgtaccagaaaacattaaaagctgtctttgttacatttgaacctt |
210 |
Q |
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| T |
31501555 |
taaaactctgttcggtggttttactacaaggtgtcaacaaggtgtcaagtttcaatgtaccagaaaacattaaaagctgtctttgttacatttgaacctt |
31501456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 204
Target Start/End: Original strand, 34500873 - 34500926
Alignment:
| Q |
150 |
aggtgtcaagtttcaatgtaccagaaaacattaaaagctgtctttgttacatttg |
204 |
Q |
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| T |
34500873 |
aggtgtcaagtttcaatgtaccag-aaacatttaaagctgtctttgttacatttg |
34500926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 27612302 - 27612364
Alignment:
| Q |
29 |
ttcttcttgttctatggtttgtgaagttatttattcatgcaatgttacaaaatgaatgaatgagaat |
95 |
Q |
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| T |
27612302 |
ttcttcttgttctatagtttgtgaagttatt----cgtgcaatgttacaaaatgaatgaatgagaat |
27612364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 204
Target Start/End: Original strand, 27612387 - 27612440
Alignment:
| Q |
150 |
aggtgtcaagtttcaatgtaccagaaaacattaaaagctgtctttgttacatttg |
204 |
Q |
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| T |
27612387 |
aggtgtcaagtttcaatgtaccag-aaacatttaaagctgtctttgttatatttg |
27612440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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