View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6092_low_15 (Length: 238)
Name: NF6092_low_15
Description: NF6092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6092_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 8723513 - 8723290
Alignment:
| Q |
1 |
ataacattgtttacaatggcgtcataaccaagcaacttatttctaaggtagtggttaactagctcttcacctgttggacaaaatctgaatccaacataat |
100 |
Q |
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| T |
8723513 |
ataacattgtttacaatggcgtcattaccaagcaacttatttctaaggtagtgattaactagctcttcacctgttggacaaaatctgaatccaacataat |
8723414 |
T |
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| Q |
101 |
gaagaatgggaggaaatgagggtgtcatttgtctgctaggctccccttcatcacacatcattgtatcattttcctcttcgccttttatctcggctttttt |
200 |
Q |
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| T |
8723413 |
gaagaatgggaggaaatgagggtgtcatttgtctgctaggctccccttcatcacacatcattgtatcattttcctcttcgccttttatctcggctttttt |
8723314 |
T |
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| Q |
201 |
catcaagcgacacaaaacaaaagt |
224 |
Q |
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|||||||||||| ||||||||||| |
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| T |
8723313 |
catcaagcgacataaaacaaaagt |
8723290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 8740167 - 8739952
Alignment:
| Q |
1 |
ataacattgtttacaatggcgtcataaccaagcaacttatttctaaggtagtgg-ttaactagctcttcacctgttggacaaaatctgaatccaa---ca |
96 |
Q |
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| T |
8740167 |
ataacattgtttacaatggaatcattaccaggtatcttatttttaaggtagtacattaacaagctcttcatctgtaggacagaatctaagtccaagaaca |
8740068 |
T |
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| Q |
97 |
taatgaagaatgggaggaaatgagggtgtcatttgtctgctaggctccccttcatcacacatcattgtatcattttcctcttcgccttttatctcggctt |
196 |
Q |
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| T |
8740067 |
aaatcaatagttggaggaaaagaggttgtcatttgtctggaagactccccttcatcacacaccattgtataattttcctcttcaccttttttctcggcat |
8739968 |
T |
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| Q |
197 |
ttttcatcaagcgaca |
212 |
Q |
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|||| |||||| |||| |
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| T |
8739967 |
ttttaatcaagtgaca |
8739952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 136 - 224
Target Start/End: Complemental strand, 8691387 - 8691299
Alignment:
| Q |
136 |
ctaggctccccttcatcacacatcattgtatcattttcctcttcgccttttatctcggcttttttcatcaagcgacacaaaacaaaagt |
224 |
Q |
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|||||||||||||||||||| |||||| ||||| |||||||||| ||||| |||| ||||| |||||||||||||||||||||||||| |
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| T |
8691387 |
ctaggctccccttcatcacatatcattctatcaatttcctcttcagcttttttctcagctttcttcatcaagcgacacaaaacaaaagt |
8691299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 8705091 - 8704996
Alignment:
| Q |
1 |
ataacattgtttacaatggcgtcataaccaagcaacttatttctaaggtagtggttaactagctcttcacctgttggacaaaatctgaatccaaca |
96 |
Q |
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||||||||||||||||||| |||| |||||| ||||| ||| | || |||||||| || ||||||||| ||||||| | ||||||||||||||| |
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| T |
8705091 |
ataacattgtttacaatggaatcattaccaagtaacttttttttgagatagtggtttacaagctcttcatctgttggtcggaatctgaatccaaca |
8704996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 8690819 - 8690724
Alignment:
| Q |
1 |
ataacattgtttacaatggcgtcataaccaagcaacttatttctaaggtagtggttaactagctcttcacctgttggacaaaatctgaatccaaca |
96 |
Q |
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||||||||||| ||||||| |||| |||||| ||||| ||| | || |||||||| || ||||||||| ||||||| | ||||||||||||||| |
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| T |
8690819 |
ataacattgttgacaatggaatcattaccaagtaacttttttttgagatagtggtttacaagctcttcatctgttggtcggaatctgaatccaaca |
8690724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 224
Target Start/End: Complemental strand, 8744664 - 8744581
Alignment:
| Q |
141 |
ctccccttcatcacacatcattgtatcattttcctcttcgccttttatctcggcttttttcatcaagcgacacaaaacaaaagt |
224 |
Q |
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||||||| ||||||| ||||||||||| ||||||||| ||| |||| ||||| |||||||||||||| ||||||||||| |
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| T |
8744664 |
ctcccctacatcacatatcattgtatccaattcctcttcagtatttttctcagctttcttcatcaagcgacataaaacaaaagt |
8744581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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