View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6092_low_3 (Length: 525)

Name: NF6092_low_3
Description: NF6092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6092_low_3
NF6092_low_3
[»] chr2 (5 HSPs)
chr2 (1-514)||(16549508-16550021)
chr2 (420-514)||(1979988-1980082)
chr2 (418-514)||(4789218-4789314)
chr2 (418-512)||(16107347-16107441)
chr2 (418-514)||(10733859-10733956)
[»] chr1 (4 HSPs)
chr1 (418-512)||(2981105-2981199)
chr1 (418-514)||(18547880-18547976)
chr1 (417-492)||(12252543-12252618)
chr1 (86-128)||(3307234-3307276)
[»] chr5 (2 HSPs)
chr5 (418-514)||(14460134-14460230)
chr5 (61-134)||(32578012-32578085)
[»] chr7 (2 HSPs)
chr7 (185-315)||(5850946-5851076)
chr7 (430-492)||(6015811-6015873)
[»] chr8 (2 HSPs)
chr8 (418-514)||(26588111-26588207)
chr8 (417-496)||(1165472-1165550)
[»] chr3 (3 HSPs)
chr3 (433-514)||(8354147-8354228)
chr3 (417-518)||(5701026-5701127)
chr3 (433-510)||(22349251-22349328)
[»] chr6 (3 HSPs)
chr6 (417-514)||(7732648-7732745)
chr6 (464-512)||(24585721-24585769)
chr6 (435-514)||(32934080-32934158)
[»] chr4 (1 HSPs)
chr4 (433-473)||(38159313-38159353)


Alignment Details
Target: chr2 (Bit Score: 430; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 514
Target Start/End: Original strand, 16549508 - 16550021
Alignment:
Q  1 tgatcatggtaaaggcttggatgtctcaaaaagaaaaggtacaagaagaggaaatcgactaaactcaattggaggtggcaagttgaagtacaaatgcttc 100  Q
    |||| |||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  16549508 tgataatggtaaaggcttgaatgtctcaagaagaaaaggtacaagtagaggaaatcgactaaactcaattggtggtggcaagttgaagtacaaatgcttc 16549607  T
Q  101 aattatcacaagaccaatcacttcaagatggattatctcaagtgcagagacaatgaaaacattctatttatgaattttatgcaaacttaagcaacacatg 200  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  16549608 aattgtcacaagaccaatcacttcaagatggattatctcaagtgcagagacaatgaaaacattctatttatgaattttatgccaacttaagaaacacatg 16549707  T
Q  201 gtcaactagtcaataccaactttaactcatgttaaaatttgcattgttatttattacattgttattgttgtttagtgttgaagtgtctcacaaatttgat 300  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  16549708 gtcaactagtcaataccaactttaactcatgttaaaatttgaattgttatttgttaaattgttattgttgtttagtgttgaagtgtctcacaaatttgat 16549807  T
Q  301 aaagcagtagtgtcgtagcactttaattcctgttataaacaaatgttgaatgaagtttgttacaatttgttatttattttctcagttatagatatgttgt 400  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16549808 aaagcagtagtgtcgtagcactttaattcctgttagaaacaaatgttgaatgaagtttgttacagtttgttatttattttctcagttatagatatgttgt 16549907  T
Q  401 agttctgcactcagcgccagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtc 500  Q
    |||||||||||||| | ||||||| |||||| ||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  16549908 agttctgcactcagtgtcagggacggattcaaaaatttcagaaagtcgggtcaaactcgcttatcataaatatttatacaaaaatatataaaaccacatc 16550007  T
Q  501 cattaaaatgatga 514  Q
    ||||||||||||||    
T  16550008 cattaaaatgatga 16550021  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 420 - 514
Target Start/End: Complemental strand, 1980082 - 1979988
Alignment:
Q  420 gggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatga 514  Q
    ||||| ||| |||||||||||||||||| ||||||  ||| ||||||||||||| || |||||||||||||||| ||   |||||||||||||||    
T  1980082 gggacggatccagaaatttcagaaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaatcataaccattaaaatgatga 1979988  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 418 - 514
Target Start/End: Original strand, 4789218 - 4789314
Alignment:
Q  418 cagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatga 514  Q
    ||||||| ||| || |||||||| |||||| ||||||  ||| ||||||||||||| || |||||||||||||||||||   |||||||||||||||    
T  4789218 cagggacggatccaaaaatttcataaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 4789314  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 418 - 512
Target Start/End: Original strand, 16107347 - 16107441
Alignment:
Q  418 cagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgat 512  Q
    ||||||| ||| ||| |||||||||||||  ||||||  ||| || |||||||||| ||||||||||||||||||||||   |||||||||||||    
T  16107347 cagggacggatccaggaatttcagaaagtagggtcaagatcgtttgtcataaatatttatacaaaaatatataaaaccataaccattaaaatgat 16107441  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 418 - 514
Target Start/End: Complemental strand, 10733956 - 10733859
Alignment:
Q  418 cagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataa-atatctatacaaaaatatataaaaccacgtccattaaaatgatga 514  Q
    ||||||| ||| ||||||||| |||||||| ||||||  ||| ||||||| | |||| || |||||||||||||||||||   |||||||||||||||    
T  10733956 cagggacggatccagaaattttagaaagtggggtcaagatcgtttatcattatatatttaaacaaaaatatataaaaccataaccattaaaatgatga 10733859  T

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Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 418 - 512
Target Start/End: Complemental strand, 2981199 - 2981105
Alignment:
Q  418 cagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgat 512  Q
    ||||||| ||| |||||||||||||||||| ||||||  ||| || |||||||||| ||||||||||||||||||||||   |||||||||||||    
T  2981199 cagggacggatccagaaatttcagaaagtggggtcaagatcgtttgtcataaatatttatacaaaaatatataaaaccataaccattaaaatgat 2981105  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 418 - 514
Target Start/End: Original strand, 18547880 - 18547976
Alignment:
Q  418 cagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatga 514  Q
    ||||||| ||| ||||||||||| |||||| ||||||  ||| ||||||||||||| || |||||||||||||||||||   |||||||||||||||    
T  18547880 cagggacggatccagaaatttcataaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 18547976  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 417 - 492
Target Start/End: Complemental strand, 12252618 - 12252543
Alignment:
Q  417 ccagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaa 492  Q
    ||||| || ||| |||||||||||  ||||| ||||||| | | ||||||||||||| ||||||||||||||||||    
T  12252618 ccaggaacggatccagaaatttcaataagtggggtcaaaattgtttatcataaatatttatacaaaaatatataaa 12252543  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 3307234 - 3307276
Alignment:
Q  86 aagtacaaatgcttcaattatcacaagaccaatcacttcaaga 128  Q
    ||||| ||||||||||||| ||||||||||||| |||||||||    
T  3307234 aagtataaatgcttcaattgtcacaagaccaataacttcaaga 3307276  T

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Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 418 - 514
Target Start/End: Original strand, 14460134 - 14460230
Alignment:
Q  418 cagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatga 514  Q
    ||||||| ||| ||| |||||||||||||| |||||  |||| ||||||||||||| || |||||||||||||||||||   |||||||||||||||    
T  14460134 cagggacggatccaggaatttcagaaagtggggtcacgctcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 14460230  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 32578012 - 32578085
Alignment:
Q  61 aaactcaattggaggtggcaagttgaagtacaaatgcttcaattatcacaagaccaatcacttcaagatggatt 134  Q
    ||||||||  || |||| ||||| |||||| | ||||||||||| ||||||||| | ||||||||||| |||||    
T  32578012 aaactcaaagggtggtgacaagtcgaagtatatatgcttcaattgtcacaagacgagtcacttcaagagggatt 32578085  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 185 - 315
Target Start/End: Original strand, 5850946 - 5851076
Alignment:
Q  185 acttaagcaacacatggtcaactagtcaataccaactttaactcatgttaaaatttgcattgttatttattacattgttattgttgtttagtgttgaagt 284  Q
    ||||||| ||||  ||||||| |||| ||| | || ||| || |||||| | ||||| || ||||||||||| ||| | |||||||||||||||||||||    
T  5850946 acttaagaaacatgtggtcaattagtaaatgctaaatttgacacatgttgagatttgaatggttatttattaaattatcattgttgtttagtgttgaagt 5851045  T
Q  285 gtctcacaaatttgataaagcagtagtgtcg 315  Q
     ||| ||||||||  ||||||||||||||||    
T  5851046 atctaacaaatttagtaaagcagtagtgtcg 5851076  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 492
Target Start/End: Complemental strand, 6015873 - 6015811
Alignment:
Q  430 cagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaa 492  Q
    |||||||||||  ||||| ||||||| | | ||||||||||||| ||||||||||||||||||    
T  6015873 cagaaatttcaataagtggggtcaaaattgtttatcataaatatttatacaaaaatatataaa 6015811  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 418 - 514
Target Start/End: Original strand, 26588111 - 26588207
Alignment:
Q  418 cagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatga 514  Q
    ||||||| ||| |||||||||||||||| | ||||||  ||| ||||||||||||| || |||||||||||||||| ||   |||||||||||||||    
T  26588111 cagggacggatccagaaatttcagaaagcggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaatcataaccattaaaatgatga 26588207  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 417 - 496
Target Start/End: Complemental strand, 1165550 - 1165472
Alignment:
Q  417 ccagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaacca 496  Q
    |||||||||||| |||||||||||||||||| |||||| |||   ||| ||||| || ||||||||| ||||||||||||    
T  1165550 ccagggacagatccagaaatttcagaaagtggggtcaagctcaggtattataaa-atttatacaaaattatataaaacca 1165472  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 433 - 514
Target Start/End: Original strand, 8354147 - 8354228
Alignment:
Q  433 aaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatga 514  Q
    |||||||| |||| ||||||||  ||| ||||||||||||| || |||||||||||||||||||   |||||||||||||||    
T  8354147 aaatttcaaaaagcgaggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 8354228  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 417 - 518
Target Start/End: Complemental strand, 5701127 - 5701026
Alignment:
Q  417 ccagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatgatg 516  Q
    |||||||  ||| |||||||||||||||||  ||||||  ||| || |||||||||| |||||||| |||| ||||||||   ||||||||||||| |||    
T  5701127 ccagggatggatccagaaatttcagaaagtagggtcaagatcgtttgtcataaatatttatacaaagatatctaaaaccataaccattaaaatgataatg 5701028  T
Q  517 tc 518  Q
    ||    
T  5701027 tc 5701026  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 433 - 510
Target Start/End: Original strand, 22349251 - 22349328
Alignment:
Q  433 aaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatg 510  Q
    |||||| |||||| |||||||| |||| || | |||||||| ||||||||||||||||||| || | |||||| ||||    
T  22349251 aaatttgagaaagagaggtcaagctcgttttttataaatatttatacaaaaatatataaaatcatgaccattataatg 22349328  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 417 - 514
Target Start/End: Original strand, 7732648 - 7732745
Alignment:
Q  417 ccagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatga 514  Q
    |||||||| ||| ||  |||| ||||||||| ||||||  ||| ||||||||||||| || |||||||||||||||| ||   |||||||||||||||    
T  7732648 ccagggacggatccaagaattacagaaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaatcataaccattaaaatgatga 7732745  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 512
Target Start/End: Original strand, 24585721 - 24585769
Alignment:
Q  464 tcataaatatctatacaaaaatatataaaaccacgtccattaaaatgat 512  Q
    |||||||||| ||||||||||||||||||||||   |||||||||||||    
T  24585721 tcataaatatttatacaaaaatatataaaaccataaccattaaaatgat 24585769  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 514
Target Start/End: Original strand, 32934080 - 32934158
Alignment:
Q  435 atttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatga 514  Q
    |||||||||| || ||||||  ||| ||||||||||||| || |||||||||||| ||||||   |||||||||||||||    
T  32934080 atttcagaaaatggggtcaagatcgtttatcataaatatttaaacaaaaatatat-aaaccatagccattaaaatgatga 32934158  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 433 - 473
Target Start/End: Original strand, 38159313 - 38159353
Alignment:
Q  433 aaatttcagaaagtgaggtcaaactcgcttatcataaatat 473  Q
    |||||||||||||||||||||| |||| |||||||||||||    
T  38159313 aaatttcagaaagtgaggtcaagctcgtttatcataaatat 38159353  T

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