View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6092_low_9 (Length: 305)
Name: NF6092_low_9
Description: NF6092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6092_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 294
Target Start/End: Original strand, 37782675 - 37782952
Alignment:
| Q |
17 |
tatgtacagacaaaagcaacgtgccatccctatctctatcacctcactcgtgtattcaattttgtacaaaccattaccatatttaaagggtatttattca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37782675 |
tatgtacagacaaaagcaacgtgccatccctatctctatcacctcactagtgtattcaattttgtacaaaccattaccatatttaaagggtatttattca |
37782774 |
T |
|
| Q |
117 |
ttgcatcatgtcacttaccaaacccactctcccaccacgattcaattcaatatttacattcaagataatctatcaatatgcaaaatcttacagaaatcaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37782775 |
ttgcatcatgtcacttaccaaacccactctcccaccacgattcaattcaatatttacattcaagataatctatcaatatgcaaaatcttacagaaatcaa |
37782874 |
T |
|
| Q |
217 |
tcatcaacaaaatacaaatattccccttcaaaacctctctcaactaagcaccgaaatggattatattcaaagcttcat |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37782875 |
tcatcaacaaaatacaaatattccccttcaaaacctctctcaactaagcaccgaaatggattctattcaaagcttcat |
37782952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University