View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6093_low_1 (Length: 211)
Name: NF6093_low_1
Description: NF6093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6093_low_1 |
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| [»] scaffold0586 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: scaffold0586 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: scaffold0586
Description:
Target: scaffold0586; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 9342 - 9555
Alignment:
| Q |
1 |
cattcctttgcgtgataagtgggaaccactcaaatatgtccaggaatgcaattttcccagaaaagccatctacccacgtttt-ccccatttcttccccat |
99 |
Q |
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|||||||||| || || ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
9342 |
cattcctttgtttggtaggtgggaaccacacaaatatgtccaggaatgcaattttcccaggaaagccatctacccacgttttcccccatttcttccccac |
9441 |
T |
|
| Q |
100 |
gttcacccttt-ttccatcccttttattcccatgagatagcttgggaaagttttatt-ccaggaaatggaaacccatgatcttgaataaaataccatatt |
197 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
9442 |
gttcaccctttgttccatcccttttattcccatgagatagcttgggaaagttttattcccaggaaatggaaacccatgatcttgaataaaataccatatt |
9541 |
T |
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| Q |
198 |
ttcccttgtcattc |
211 |
Q |
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|||||||| ||||| |
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| T |
9542 |
ttcccttgccattc |
9555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 7e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 10637372 - 10637585
Alignment:
| Q |
1 |
cattcctttgcgtgataagtgggaaccactcaaatatgtccaggaatgcaattttcccagaaaagccatctacccacgtttt-ccccatttcttccccat |
99 |
Q |
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|||||||||| || |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
10637372 |
cattcctttgtttggtaagtgggaaccacacaaatatgtccaggaatgcaattttcccaggaaagccatctacccacgttttcccccatttcttccccac |
10637471 |
T |
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| Q |
100 |
gttcaccc-tttttccatcccttttattcccatgagatagcttgggaaagttttatt-ccaggaaatggaaacccatgatcttgaataaaataccatatt |
197 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10637472 |
gttcacccttttttccatcccttttattcccatgagatagcttgggaaagttttattcccaggaaatggaaacccatgaacttgaataaaataccatatt |
10637571 |
T |
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| Q |
198 |
ttcccttgtcattc |
211 |
Q |
| |
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| |||||| ||||| |
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| T |
10637572 |
tgcccttgccattc |
10637585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 32718222 - 32718009
Alignment:
| Q |
1 |
cattcctttgcgtgataagtgggaaccactcaaatatgtccaggaatgcaattttcccagaaaagccatctacccacgtttt-ccccatttcttccccat |
99 |
Q |
| |
|
|||||||||| || |||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
32718222 |
cattcctttgtttggtaagtgggaaccacacaaatatgtctaggaatgcaattttcccaggaaagccatctacccacgttttcccccatttcttccccac |
32718123 |
T |
|
| Q |
100 |
gttcaccc-tttttccatcccttttattcccatgagatagcttgggaaagttttatt-ccaggaaatggaaacccatgatcttgaataaaataccatatt |
197 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32718122 |
gttcacccttttttccatcccttttattcccatgagatggcttgggaaagttttattcccaggaaatggaaacccatgatcttgaataaaataccatatt |
32718023 |
T |
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| Q |
198 |
ttcccttgtcattc |
211 |
Q |
| |
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| |||||| ||||| |
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| T |
32718022 |
tgcccttgccattc |
32718009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 19700911 - 19701122
Alignment:
| Q |
1 |
cattcctttgcgtgataagtgggaaccactcaaatatgtccaggaatgcaattttcccagaaaagccatctacccacgttttccccatttcttccccatg |
100 |
Q |
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|||||||||| || |||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||| | |
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| T |
19700911 |
cattcctttgtttggtaagtgggaaccacacaaatatgtccaggaatacaattttcccaggaaagccatctacccacgtttt-cccatttcttccccacg |
19701009 |
T |
|
| Q |
101 |
ttcaccc-tttttccatcccttttattcccatgagatagcttgggaaagttttatt-ccaggaaatggaaacccatgatcttgaataaaataccatattt |
198 |
Q |
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||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19701010 |
ttcacccttttttccatcccttttattcccaagagatagcttgggaaagttttattcccaggaaatggaaacccatgatcttgaataaaataccatattt |
19701109 |
T |
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| Q |
199 |
tcccttgtcattc |
211 |
Q |
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||||||| ||||| |
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| T |
19701110 |
tcccttgccattc |
19701122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 157
Target Start/End: Original strand, 21481271 - 21481309
Alignment:
| Q |
119 |
cttttattcccatgagatagcttgggaaagttttattcc |
157 |
Q |
| |
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||||||||||| ||||||||| ||||||||||||||||| |
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| T |
21481271 |
cttttattcccctgagatagcatgggaaagttttattcc |
21481309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 22893528 - 22893740
Alignment:
| Q |
1 |
cattcctttgcgtgataagtgggaaccactcaaatatgtccaggaatgcaattttcccagaaaagccatctacccacgttttcccc-atttcttccccat |
99 |
Q |
| |
|
|||||||||| || |||||||||||||| |||||||||| ||||||||||||| |||| ||||||||||||||| ||||||||| |||||||||||| |
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| T |
22893528 |
cattcctttgtttggtaagtgggaaccacacaaatatgtcaaggaatgcaattt-cccatgaaagccatctacccatgttttcccccatttcttccccac |
22893626 |
T |
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| Q |
100 |
gttcacccttttt-ccatcccttttattcccatgagatagcttgggaaagttttattcc-aggaaatggaaacccatgatcttgaataaaataccatatt |
197 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22893627 |
gttcacccttttttccatcccttttattcccatgagatagcttgggaaagttttattcccaggaaatggaaacccatgatcttgaataaaataccatatt |
22893726 |
T |
|
| Q |
198 |
ttcccttgtcattc |
211 |
Q |
| |
|
|||||||| ||||| |
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| T |
22893727 |
ttcccttgccattc |
22893740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 44305971 - 44306032
Alignment:
| Q |
119 |
cttttattcccatgagatagcttgggaaagttttattcc-aggaaatggaaacccatgatct |
179 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| ||| ||||||| ||||||||||||| |
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| T |
44305971 |
cttttattcccatctgatagcttgggaaacttttagtcctaggaaatataaacccatgatct |
44306032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 104 - 211
Target Start/End: Complemental strand, 13342738 - 13342631
Alignment:
| Q |
104 |
accctttttccatcccttttattcccatgagatagcttgggaaagttttattccaggaaatggaaacccatgatcttgaataaaataccatattttccct |
203 |
Q |
| |
|
||||||||||||||| || ||||||||||| ||||||||||||||||| ||||| | ||| ||||||||||||||| ||||||| ||||| ||| |||| |
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|
| T |
13342738 |
accctttttccatccattctattcccatgaaatagcttgggaaagtttcattcccaggaattgaaacccatgatcttcaataaaaaaccatttttgccct |
13342639 |
T |
|
| Q |
204 |
tgtcattc |
211 |
Q |
| |
|
|||||||| |
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|
| T |
13342638 |
tgtcattc |
13342631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 104 - 211
Target Start/End: Complemental strand, 13331823 - 13331716
Alignment:
| Q |
104 |
accctttttccatcccttttattcccatgagatagcttgggaaagttttattccaggaaatggaaacccatgatcttgaataaaataccatattttccct |
203 |
Q |
| |
|
||||||||||||||| || ||||||||||| ||||||||||||||||| ||||| | ||| ||||||||||||||| ||||||| ||||| ||| |||| |
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| T |
13331823 |
accctttttccatccattctattcccatgaaatagcttgggaaagtttcattcccaggaattgaaacccatgatcttcaataaaaaaccatttttgccct |
13331724 |
T |
|
| Q |
204 |
tgtcattc |
211 |
Q |
| |
|
|| ||||| |
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|
| T |
13331723 |
tgccattc |
13331716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 104 - 211
Target Start/End: Complemental strand, 5672294 - 5672187
Alignment:
| Q |
104 |
accctttttccatcccttttattcccatgagatagcttgggaaagttttattccaggaaatggaaacccatgatcttgaataaaataccatattttccct |
203 |
Q |
| |
|
||||||||||||||| || ||||||||||| ||||||||||||||||| ||||| | ||| ||||||||||||||| ||||||| ||||| ||| |||| |
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| T |
5672294 |
accctttttccatccattctattcccatgaaatagcttgggaaagtttcattcccaggaattgaaacccatgatcttcaataaaaaaccatttttgccct |
5672195 |
T |
|
| Q |
204 |
tgtcattc |
211 |
Q |
| |
|
|||||||| |
|
|
| T |
5672194 |
tgtcattc |
5672187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 2 - 211
Target Start/End: Complemental strand, 15762370 - 15762160
Alignment:
| Q |
2 |
attcctttgcgtgataagtgggaaccactcaaatatgtccaggaatgcaattttcccagaaaagccatctacccacgttttccccatttcttccccatgt |
101 |
Q |
| |
|
||||||||| || || ||||| ||||| |||||||| | |||||| || ||||||||| |||| || ||||||||| ||||| || | ||||| || |
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| T |
15762370 |
attcctttgtttggtaggtgggtaccacacaaatatgcctaggaatacatttttcccaggaaagtaatacacccacgttctcccccattttcccccacgt |
15762271 |
T |
|
| Q |
102 |
tcaccct-ttttccatcccttttattcccatgagatagcttgggaaagttttatt-ccaggaaatggaaacccatgatcttgaataaaataccatatttt |
199 |
Q |
| |
|
||| ||| |||| |||||||| ||||||||||| |||||||||||||| |||||| ||| | |||||||| |||||||||| ||||||||||||| ||| |
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| T |
15762270 |
tcaacctatttttcatcccttctattcccatgaaatagcttgggaaagatttattcccatggaatggaaa-ccatgatcttcaataaaataccatttttg |
15762172 |
T |
|
| Q |
200 |
cccttgtcattc |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
15762171 |
tccttgtcattc |
15762160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 6049754 - 6049815
Alignment:
| Q |
119 |
cttttattcccatgagatagcttgggaaagttttatt-ccaggaaatggaaacccatgatct |
179 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||| |||||||||| ||||||||||||| |
|
|
| T |
6049754 |
cttttattcccatctgatagcttgggaaacttttattcccaggaaatgtaaacccatgatct |
6049815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 13893962 - 13893901
Alignment:
| Q |
119 |
cttttattcccatgagatagcttgggaaagttttatt-ccaggaaatggaaacccatgatct |
179 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||| |||| ||||| ||||||||||||| |
|
|
| T |
13893962 |
cttttattcccatctgatagcttgggaaacttttattcccagaaaatgtaaacccatgatct |
13893901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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