View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6094_high_1 (Length: 707)
Name: NF6094_high_1
Description: NF6094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6094_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 602; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 22 - 698
Target Start/End: Original strand, 41705316 - 41705995
Alignment:
| Q |
22 |
gtcacacaccgcctcaatcacaaaggccgagcatggtcgactgaggggtatgaatagaccagacccgctcacatgggcctatggttttccc--tacttaa |
119 |
Q |
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| T |
41705316 |
gtcacacaccacctcaatcacaaaggccgagcatggtcgactgaggggtatgaatagaccagacccgctgacatgggcctatggttttccccctacttaa |
41705415 |
T |
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| Q |
120 |
agctggactcggcatggtttgtttagtaaaaaggttaggttcataaaactaagagaatctatcagctgaaacatattgataactataaacatcggttata |
219 |
Q |
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| T |
41705416 |
agctggactcggcatggtttgtttagtaaaaaggttaggttcataaaactaagagaatctatcagctgaaacatattgataactataaacatcggttata |
41705515 |
T |
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| Q |
220 |
agcaattatattaattcaatgttctgaactaacaccgcattatttcattcaaatttactatgacagtgggattgacttaaattcaaaacgcattttcatt |
319 |
Q |
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| T |
41705516 |
agcaattatattaattcaatgttctgaactaacaccgcattatttcattcaaatttactatgacagtgggattgacttaaattcaaaacgcattttcatt |
41705615 |
T |
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| Q |
320 |
ttcttctattaggtacttcacacctttagtatttcattagaagtcttaaatattaaaatcgttgagtaccttacaaatatttttcatgtatctaaggctg |
419 |
Q |
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| T |
41705616 |
ttcttctattaggtacttcacacctttagtatttcattagaagtcttaaatattaaaatcgttgagtaccttacatatatttttcatgtatctaaggctg |
41705715 |
T |
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| Q |
420 |
caactaactgtgtatgatgaaagataatgcagcaaaagaatgtttgagccaaatgacttgactataagaaaagaatgcaaattcgatgcagaaccatgtt |
519 |
Q |
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| T |
41705716 |
caactaactgtgtatgatgaaagataatgcagcaaaagaatgtttgagccaaatgacttgactataagaaaagaaagcaaattcgacgcagaaccatgtt |
41705815 |
T |
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| Q |
520 |
gcagcaaaatagcccaaacaattgatatcagtagtaggtacacaggtagaggaaccaaaatagccctcggtaaaatacaagattcaactctattcagggt |
619 |
Q |
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| T |
41705816 |
gcagcaaaatagcccaaacaattgatatcagtagtaggtacacaggtagaggaaccaaaatagccctcggtaaaatacaagattcaactctattcaggat |
41705915 |
T |
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| Q |
620 |
gtatacactgcgaagagtcatctgcaattagacc-nnnnnnnnnactccatcgtgagtacaattcctcgttcagtattat |
698 |
Q |
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| T |
41705916 |
gtatacgctgcgaagagtcatctgcaattagaccttttttttttactccatcgtgagtacaatccctcgttcagtattat |
41705995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 565 - 651
Target Start/End: Original strand, 41715719 - 41715805
Alignment:
| Q |
565 |
gtagaggaaccaaaatagccctcggtaaaatacaagattcaactctattcagggtgtatacactgcgaagagtcatctgcaattaga |
651 |
Q |
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| T |
41715719 |
gtagaggaaccaaaatagccctcagctaaatacaagattcaactcttatcagggtgtatacaccgccaagagtcatctgcagttaga |
41715805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 500
Target Start/End: Original strand, 41647973 - 41648040
Alignment:
| Q |
433 |
atgatgaaagataatgcagcaaaagaatgtttgagccaaatgacttgactataagaaaagaatgcaaa |
500 |
Q |
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| T |
41647973 |
atgatgaaggataatgcaccaaaaccatgtttgagacaaatgcctttgctacaagaaaagaatgcaaa |
41648040 |
T |
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