View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6094_high_10 (Length: 279)
Name: NF6094_high_10
Description: NF6094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6094_high_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 262
Target Start/End: Original strand, 18754109 - 18754358
Alignment:
| Q |
13 |
aatatagaagcacatcaaagctattttctggctgaagtaaatcaggtcacaaagaagacctttgagtaaaatttggcaaacattgcaccatgctacaatg |
112 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18754109 |
aatatagaagcagatcaaagctattttctggctgaagtaaatcaggtcacaaagaaaacctttgagtaaaatttggcaaacattgcaccatgctacaatc |
18754208 |
T |
|
| Q |
113 |
tagagtttggttacactgaccaaactaatgtaagttttgtaaggctacatcctactcatggtttcatgtgggaaagggaaatgccaaactcagagttact |
212 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
18754209 |
tagagtttggtcacactgaacaaactaatgtaagttttgtaaggctacatcctactcatggtttcatgtgggaaaggtaaatgccaaacacagagttact |
18754308 |
T |
|
| Q |
213 |
tgagaaggagatgtttccaccaactgggtggaatgttgaaaagagttaat |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18754309 |
tgagaaggagatgtttccaccaactgggtggaatgtcgaaaagagttaat |
18754358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 189
Target Start/End: Complemental strand, 21378813 - 21378645
Alignment:
| Q |
21 |
agcacatcaaagctattttctggctgaagtaaatcaggtcacaaagaagacctttgagtaaaatttggcaaacattgcaccatgctacaatgtagagttt |
120 |
Q |
| |
|
|||| ||||||| | |||||| ||| |||| ||||| ||||||| ||| ||||||||| ||||||||||||| |||| ||||| | || ||| | | |
|
|
| T |
21378813 |
agcagatcaaagtttttttcttgctaaagttaatcaagtcacaaggaaaacctttgagaaaaatttggcaaatattgtgccatgttcttttgcagaatct |
21378714 |
T |
|
| Q |
121 |
ggttacactgaccaaactaatgtaagttttgtaaggctacatcctactcatggtttcatgtgggaaagg |
189 |
Q |
| |
|
|||| ||||||| | || |||| |||| ||||||||| || || |||||||||||||||||||||||| |
|
|
| T |
21378713 |
ggttgcactgactagacagatgtgagttatgtaaggcttcaccccactcatggtttcatgtgggaaagg |
21378645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 14929986 - 14929901
Alignment:
| Q |
19 |
gaagcacatcaaagctattttctggctgaagtaaatcaggtcacaaagaagacctttgagtaaaatttggcaaacattgcaccatg |
104 |
Q |
| |
|
|||||| ||||||| || ||||| |||||||| ||| | |||||| ||||||||||||| ||| ||||||||| || |||||||| |
|
|
| T |
14929986 |
gaagcagatcaaagttactttcttgctgaagtcaataatttcacaaggaagacctttgagaaaagtttggcaaaaatagcaccatg |
14929901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 191
Target Start/End: Original strand, 19886032 - 19886079
Alignment:
| Q |
144 |
aagttttgtaaggctacatcctactcatggtttcatgtgggaaaggga |
191 |
Q |
| |
|
||||| |||||| | |||||| |||||||||||||||||||||||||| |
|
|
| T |
19886032 |
aagttctgtaagacaacatccaactcatggtttcatgtgggaaaggga |
19886079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University