View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6094_high_8 (Length: 345)

Name: NF6094_high_8
Description: NF6094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6094_high_8
NF6094_high_8
[»] chr8 (4 HSPs)
chr8 (1-336)||(9781279-9781614)
chr8 (110-152)||(11394202-11394244)
chr8 (110-152)||(24793995-24794037)
chr8 (78-152)||(32266806-32266880)
[»] chr2 (5 HSPs)
chr2 (20-268)||(12807914-12808162)
chr2 (20-272)||(16315539-16315791)
chr2 (3-271)||(32991230-32991497)
chr2 (112-152)||(36804371-36804411)
chr2 (112-152)||(36804156-36804196)
[»] chr5 (1 HSPs)
chr5 (102-186)||(23878398-23878482)
[»] chr4 (1 HSPs)
chr4 (69-264)||(35324178-35324373)
[»] scaffold0472 (1 HSPs)
scaffold0472 (78-152)||(3496-3570)
[»] chr7 (2 HSPs)
chr7 (110-152)||(19728731-19728773)
chr7 (112-152)||(18671414-18671454)
[»] chr3 (1 HSPs)
chr3 (110-152)||(14867639-14867681)


Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 9781279 - 9781614
Alignment:
Q  1 tgtgttaagtttcgtcgtctgtttgatttgtcaaaaaataaaatggcgactatagcacaaatgtttgtttggggatgggatgagggtggcgaggcttcgt 100  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |     
T  9781279 tgtgttaaatttcgtcgtttgtttgatttgtcaaaaaataaaatggcgactatagcacaaatgtttgtttggggatgggatgagggtggtgaggctttga 9781378  T
Q  101 ggtggtgtaggaggttgtaggcgtgggaggagggtttgttagaggagtgtagcaatatgctgctaaatgttttattgcaggttgatactgaggactcctg 200  Q
    ||||| |||| || |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9781379 ggtggcgtagaagattgtaggcatgggaggagggtttgttagatgagtgtagcaatatgctgctaaatgttttaatgcaggttgatactgaggactcctg 9781478  T
Q  201 gagttggatacctaatccgatcgtggggtacactgtcagtggtgcttatcgagtgctcacatcaaggccgccactcacttcgcatgctttagtggctggt 300  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||    
T  9781479 gagttggatacctgatccgatcgtgggatacactgtcagtggtgcttatcgagtgctcacatcaaggccaccactcacttcgcatgccctagtggctggt 9781578  T
Q  301 ctgtggaggaatgacgttccattggatgtctctgtg 336  Q
    ||||||||||||||||||||||||||||||| ||||    
T  9781579 ctgtggaggaatgacgttccattggatgtctttgtg 9781614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 152
Target Start/End: Original strand, 11394202 - 11394244
Alignment:
Q  110 ggaggttgtaggcgtgggaggagggtttgttagaggagtgtag 152  Q
    ||||||||| |||||||||||||| ||| ||||||||||||||    
T  11394202 ggaggttgtgggcgtgggaggaggttttattagaggagtgtag 11394244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 152
Target Start/End: Complemental strand, 24794037 - 24793995
Alignment:
Q  110 ggaggttgtaggcgtgggaggagggtttgttagaggagtgtag 152  Q
    ||||||||| |||||||||||||| ||| ||||||||||||||    
T  24794037 ggaggttgtgggcgtgggaggaggttttattagaggagtgtag 24793995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 152
Target Start/End: Complemental strand, 32266880 - 32266806
Alignment:
Q  78 ggatgagggtggcgaggcttcgtggtggtgtaggaggttgtaggcgtgggaggagggtttgttagaggagtgtag 152  Q
    ||||| |||||| ||||| | | ||||| |||||||||||| ||| ||||||||||  ||| |||||||||||||    
T  32266880 ggatgtgggtggggaggcgttgcggtggcgtaggaggttgtgggcctgggaggaggagttggtagaggagtgtag 32266806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 7e-43; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 20 - 268
Target Start/End: Original strand, 12807914 - 12808162
Alignment:
Q  20 tgtttgatttgtcaaaaaataaaatggcgactatagcacaaatgtttgtttggggatgggatgagggtggcgaggcttcgtggtggtgtaggaggttgta 119  Q
    ||||||| || ||| ||||||||||||||| | | ||||||||||||  |||||| ||||||||||| || ||||||| |  |||||||||||||||||     
T  12807914 tgtttgacttatcagaaaataaaatggcgattgttgcacaaatgtttccttggggctgggatgagggaggagaggcttggaagtggtgtaggaggttgtg 12808013  T
Q  120 ggcgtgggaggagggtttgttagaggagtgtagcaatatgctgctaaatgttttattgcaggttgatactgaggactcctggagttggatacctaatccg 219  Q
    ||||||||||||||  ||| ||||||||||| | |||||| |||||| |||| | ||||||||||||| |||||| || ||||| | ||  ||| |||||    
T  12808014 ggcgtgggaggaggcgttggtagaggagtgtgggaatatgttgctaactgttgtgttgcaggttgatattgaggattcttggagattgacgcctgatccg 12808113  T
Q  220 atcgtggggtacactgtcagtggtgcttatcgagtgctcacatcaaggc 268  Q
     ||||||| || ||  | ||||||||||||| |||||||||||| ||||    
T  12808114 gtcgtgggatataccattagtggtgcttatcaagtgctcacatctaggc 12808162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 20 - 272
Target Start/End: Original strand, 16315539 - 16315791
Alignment:
Q  20 tgtttgatttgtcaaaaaataaaatggcgactatagcacaaatgtttgtttggggatgggatgagggtggcgaggcttcgtggtggtgtaggaggttgta 119  Q
    ||||||| || ||| || |||||||||||| | | ||||||||||| | |  ||| ||||||||||| || ||||||| |   ||| |||| |||||||     
T  16315539 tgtttgacttatcagaagataaaatggcgattgttgcacaaatgttggctatgggctgggatgagggaggagaggcttggaactggcgtagtaggttgtg 16315638  T
Q  120 ggcgtgggaggagggtttgttagaggagtgtagcaatatgctgctaaatgttttattgcaggttgatactgaggactcctggagttggatacctaatccg 219  Q
    ||||||||||||||  ||| ||||||||||||| ||||||||||||||| || | ||||||||||||  |||||  || ||||| |||| |||| ||| |    
T  16315639 ggcgtgggaggaggccttggtagaggagtgtaggaatatgctgctaaatattgtgttgcaggttgatcttgagggttcttggagatggacacctgatctg 16315738  T
Q  220 atcgtggggtacactgtcagtggtgcttatcgagtgctcacatcaaggccgcc 272  Q
     ||||||| || ||||| ||||||||||||||||||||||||||  |||||||    
T  16315739 gtcgtgggatatactgttagtggtgcttatcgagtgctcacatctgggccgcc 16315791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 271
Target Start/End: Original strand, 32991230 - 32991497
Alignment:
Q  3 tgttaagtttcgtcgtctgtttgatttgtcaaaaaataaaatggcgactatagcacaaatgtttgtttggggatgggatgagggtggcgaggcttcgtgg 102  Q
    ||||| |||||| ||| ||| ||| || ||||||||||||||||||||  | || |||| ||| | |||||| | ||||||||  || ||||||| |  |    
T  32991230 tgttaggtttcgccgtttgtatgagttatcaaaaaataaaatggcgaccgttgctcaaacgtt-gcttggggttaggatgaggaaggggaggcttggaag 32991328  T
Q  103 tggtgtaggaggttgtaggcgtgggaggagggtttgttagaggagtgtagcaatatgctgctaaatgttttattgcaggttgatactgaggactcctgga 202  Q
    ||| | ||| | |||| || |||||||||||  ||| ||||||||||||| |||||| || || ||||| | |||||| ||| |  |||||| |||||||    
T  32991329 tggcgaaggggattgtgggtgtgggaggaggcgttggtagaggagtgtaggaatatgttgttacatgttgtgttgcagattgttgttgaggattcctgga 32991428  T
Q  203 gttggatacctaatccgatcgtggggtacactgtcagtggtgcttatcgagtgctcacatcaaggccgc 271  Q
    | |||   ||| || || | || | |||||||||||||||||||||| | |||||||||||| ||||||    
T  32991429 gatggtctcctgatacggttgtcgtgtacactgtcagtggtgcttatagtgtgctcacatcagggccgc 32991497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 36804411 - 36804371
Alignment:
Q  112 aggttgtaggcgtgggaggagggtttgttagaggagtgtag 152  Q
    ||||||||||||||||||||||  |||||||||||||||||    
T  36804411 aggttgtaggcgtgggaggaggacttgttagaggagtgtag 36804371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 36804196 - 36804156
Alignment:
Q  112 aggttgtaggcgtgggaggagggtttgttagaggagtgtag 152  Q
    ||||||| ||||||||||||||  |||||||||||||||||    
T  36804196 aggttgtgggcgtgggaggaggacttgttagaggagtgtag 36804156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 23878398 - 23878482
Alignment:
Q  102 gtggtgtaggaggttgtaggcgtgggaggagggtttgttagaggagtgtagcaatatgctgctaaatgttttattgcaggttgat 186  Q
    |||| |||||||||||| |||||||||||||| |||| ||| |||||| || |||||  ||  | ||||||||||| ||||||||    
T  23878398 gtggcgtaggaggttgtgggcgtgggaggaggatttggtagtggagtggaggaatattatgtcagatgttttattgtaggttgat 23878482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 264
Target Start/End: Original strand, 35324178 - 35324373
Alignment:
Q  69 ttggggatgggatgagggtggcgaggcttcgtggtggtgtaggaggttgtaggcgtgggaggagggtttgttagaggagtgtagcaatatgctgctaaat 168  Q
    |||||| ||||||||||| || |||| || |  |||| ||||||| |||| ||| |||||||||| |||| ||| | ||||||  |||||| ||  | ||    
T  35324178 ttgggggtgggatgagggaggggaggtttggaagtggcgtaggagattgtgggcttgggaggaggatttggtagtgaagtgtaagaatatgttgtcagat 35324277  T
Q  169 gttttattgcaggttgatactgaggactcctggagttggatacctaatccgatcgtggggtacactgtcagtggtgcttatcgagtgctcacatca 264  Q
     ||||||||||||||||| | || ||||  ||||| ||||  ||| | ||| | | ||||||| |||| ||||| ||||||||  | |||||||||    
T  35324278 attttattgcaggttgattcagatgactattggaggtggaatcctgacccggttgcggggtactctgtaagtggggcttatcgcctactcacatca 35324373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 152
Target Start/End: Complemental strand, 3570 - 3496
Alignment:
Q  78 ggatgagggtggcgaggcttcgtggtggtgtaggaggttgtaggcgtgggaggagggtttgttagaggagtgtag 152  Q
    ||||| |||||| ||||| | | ||||| |||||||||||| ||| ||||||||||  ||| |||||||||||||    
T  3570 ggatgtgggtggggaggcgttgcggtggcgtaggaggttgtgggcctgggaggaggagttggtagaggagtgtag 3496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 152
Target Start/End: Complemental strand, 19728773 - 19728731
Alignment:
Q  110 ggaggttgtaggcgtgggaggagggtttgttagaggagtgtag 152  Q
    ||||||||| |||||||||||||| ||| ||||||||||||||    
T  19728773 ggaggttgtgggcgtgggaggaggttttattagaggagtgtag 19728731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 18671454 - 18671414
Alignment:
Q  112 aggttgtaggcgtgggaggagggtttgttagaggagtgtag 152  Q
    ||||||| ||| |||||||||| ||||||||||||||||||    
T  18671454 aggttgtgggcatgggaggaggctttgttagaggagtgtag 18671414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 152
Target Start/End: Original strand, 14867639 - 14867681
Alignment:
Q  110 ggaggttgtaggcgtgggaggagggtttgttagaggagtgtag 152  Q
    ||||||||| |||||||||||||| ||| ||||||||||||||    
T  14867639 ggaggttgtgggcgtgggaggaggttttattagaggagtgtag 14867681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University