View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6094_low_14 (Length: 240)

Name: NF6094_low_14
Description: NF6094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6094_low_14
NF6094_low_14
[»] chr8 (7 HSPs)
chr8 (1-90)||(9781140-9781228)
chr8 (1-38)||(2019736-2019773)
chr8 (154-195)||(9781023-9781064)
chr8 (3-36)||(19925477-19925510)
chr8 (1-37)||(30973952-30973988)
chr8 (1-42)||(36907735-36907776)
chr8 (6-42)||(42102065-42102101)
[»] chr4 (11 HSPs)
chr4 (1-40)||(52700630-52700669)
chr4 (1-41)||(10794996-10795036)
chr4 (1-36)||(9153669-9153704)
chr4 (1-40)||(28663402-28663441)
chr4 (1-44)||(38345908-38345951)
chr4 (1-34)||(12022987-12023020)
chr4 (1-41)||(10796345-10796385)
chr4 (1-39)||(2702802-2702840)
chr4 (1-39)||(3564181-3564219)
chr4 (1-42)||(19725251-19725292)
chr4 (6-38)||(15184509-15184541)
[»] chr3 (9 HSPs)
chr3 (1-42)||(4974269-4974310)
chr3 (1-42)||(30383726-30383767)
chr3 (1-32)||(37601100-37601131)
chr3 (6-44)||(20894459-20894497)
chr3 (1-33)||(17752172-17752204)
chr3 (1-33)||(19053492-19053524)
chr3 (6-42)||(23555442-23555478)
chr3 (1-33)||(29270328-29270360)
chr3 (1-33)||(34707800-34707832)
[»] chr1 (5 HSPs)
chr1 (1-37)||(16225472-16225508)
chr1 (3-37)||(45179090-45179124)
chr1 (6-42)||(15791342-15791378)
chr1 (1-33)||(45267446-45267478)
chr1 (16-44)||(45856194-45856222)
[»] scaffold0512 (1 HSPs)
scaffold0512 (1-44)||(4028-4071)
[»] chr6 (2 HSPs)
chr6 (1-40)||(716012-716051)
chr6 (5-41)||(8011137-8011173)
[»] chr5 (8 HSPs)
chr5 (1-40)||(15413952-15413991)
chr5 (1-40)||(26002957-26002996)
chr5 (1-39)||(31637163-31637201)
chr5 (1-33)||(1372080-1372112)
chr5 (5-41)||(14243973-14244009)
chr5 (1-41)||(28625453-28625493)
chr5 (5-41)||(35536992-35537028)
chr5 (1-41)||(42706769-42706809)
[»] chr7 (4 HSPs)
chr7 (1-40)||(35809050-35809089)
chr7 (1-39)||(22319378-22319416)
chr7 (2-34)||(30181516-30181548)
chr7 (1-33)||(38372525-38372557)
[»] chr2 (7 HSPs)
chr2 (1-35)||(18277018-18277052)
chr2 (1-35)||(38215988-38216022)
chr2 (3-40)||(9140647-9140684)
chr2 (1-33)||(735886-735918)
chr2 (5-41)||(4533470-4533506)
chr2 (1-41)||(12223980-12224020)
chr2 (5-37)||(17317156-17317188)
[»] scaffold0015 (1 HSPs)
scaffold0015 (1-38)||(48844-48881)
[»] scaffold1088 (1 HSPs)
scaffold1088 (1-37)||(1257-1293)
[»] scaffold0091 (1 HSPs)
scaffold0091 (1-41)||(2652-2692)


Alignment Details
Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 9781228 - 9781140
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaacggaccctaattctttgttttgcaataactatgaaattattttatcacggatgctttg 90  Q
    ||||||||||||||||||||||||||||||||| ||  ||| |||||| ||||||||||||||||||||||||||||||||||| |||||    
T  9781228 tttgcataagctctaaaataagtcaatccaaacagattcta-ttctttattttgcaataactatgaaattattttatcacggattctttg 9781140  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2019736 - 2019773
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaacggacc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2019736 tttgcataagctctaaaataagtcaatccaaacggacc 2019773  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 9781064 - 9781023
Alignment:
Q  154 cctagataagttggttataagttacatgcatacgtttgtttt 195  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  9781064 cctagataagttggttataagttacctgcatacgtttgtttt 9781023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 19925477 - 19925510
Alignment:
Q  3 tgcataagctctaaaataagtcaatccaaacgga 36  Q
    ||||||||||||||||||||||||||||||||||    
T  19925477 tgcataagctctaaaataagtcaatccaaacgga 19925510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30973988 - 30973952
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaacggac 37  Q
    |||||||||||||||||||||| ||||||||||||||    
T  30973988 tttgcataagctctaaaataagccaatccaaacggac 30973952  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 36907735 - 36907776
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaacggaccctaa 42  Q
    |||||||||||||||||||||| ||||||||| || ||||||    
T  36907735 tttgcataagctctaaaataagccaatccaaatgggccctaa 36907776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 42102101 - 42102065
Alignment:
Q  6 ataagctctaaaataagtcaatccaaacggaccctaa 42  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  42102101 ataagctctaaaataagttaatccaaacgggccctaa 42102065  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 52700630 - 52700669
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaacggaccct 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  52700630 tttgcataagctctaaaataagtcaatccaaacggaccct 52700669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 10794996 - 10795036
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaacggacccta 41  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  10794996 tttgcataagctctaaaataagtcaattcaaacggacccta 10795036  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 9153669 - 9153704
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaacgga 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  9153669 tttgcataagctctaaaataagtcaatccaaacgga 9153704  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 28663441 - 28663402
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaacggaccct 40  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  28663441 tttgcataagctcaaaaataagtcaatccaaacggaccct 28663402  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 38345908 - 38345951
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaacggaccctaatt 44  Q
    ||||||||||||| || |||||||||||||||||||||||||||    
T  38345908 tttgcataagctcaaacataagtcaatccaaacggaccctaatt 38345951  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 12023020 - 12022987
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaacg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  12023020 tttgcataagctctaaaataagtcaatccaaacg 12022987  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 10796385 - 10796345
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaacggacccta 41  Q
    |||||||||||||||||||||| |||| |||||||||||||    
T  10796385 tttgcataagctctaaaataagccaattcaaacggacccta 10796345  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 2702802 - 2702840
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaacggaccc 39  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  2702802 tttgcataagctctaaaataagccaatccaaacagaccc 2702840  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 3564219 - 3564181
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaacggaccc 39  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  3564219 tttgcataagctcaaaaacaagtcaatccaaacggaccc 3564181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 19725292 - 19725251
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaacggaccctaa 42  Q
    |||| |||||||||||||||||| | ||||||||||||||||    
T  19725292 tttgtataagctctaaaataagttattccaaacggaccctaa 19725251  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 15184541 - 15184509
Alignment:
Q  6 ataagctctaaaataagtcaatccaaacggacc 38  Q
    |||||||||||||||||| ||||||||||||||    
T  15184541 ataagctctaaaataagttaatccaaacggacc 15184509  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4974310 - 4974269
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaacggaccctaa 42  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  4974310 tttgcataagctctaaaataagccaatccaaacggaccctaa 4974269  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 30383767 - 30383726
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaacggaccctaa 42  Q
    ||||||||||||||||||| ||||||||||||| ||||||||    
T  30383767 tttgcataagctctaaaattagtcaatccaaaccgaccctaa 30383726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 37601100 - 37601131
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaa 32  Q
    ||||||||||||||||||||||||||||||||    
T  37601100 tttgcataagctctaaaataagtcaatccaaa 37601131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 20894497 - 20894459
Alignment:
Q  6 ataagctctaaaataagtcaatccaaacggaccctaatt 44  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  20894497 ataagctctaaaataagctaatccaaacggaccctaatt 20894459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 17752172 - 17752204
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaac 33  Q
    |||||||||||| ||||||||||||||||||||    
T  17752172 tttgcataagctttaaaataagtcaatccaaac 17752204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 19053492 - 19053524
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaac 33  Q
    |||||||||||| ||||||||||||||||||||    
T  19053492 tttgcataagctttaaaataagtcaatccaaac 19053524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 23555478 - 23555442
Alignment:
Q  6 ataagctctaaaataagtcaatccaaacggaccctaa 42  Q
    |||||||| |||||||| |||||||||||||||||||    
T  23555478 ataagctcaaaaataagccaatccaaacggaccctaa 23555442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 29270360 - 29270328
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaac 33  Q
    ||||||||||||| |||||||||||||||||||    
T  29270360 tttgcataagctcaaaaataagtcaatccaaac 29270328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 34707800 - 34707832
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaac 33  Q
    ||||||||||||| |||||||||||||||||||    
T  34707800 tttgcataagctcaaaaataagtcaatccaaac 34707832  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 16225508 - 16225472
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaacggac 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  16225508 tttgcataagctctaaaataagtcaatccaaacggac 16225472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 45179090 - 45179124
Alignment:
Q  3 tgcataagctctaaaataagtcaatccaaacggac 37  Q
    ||||||||||||||||||||| |||||||||||||    
T  45179090 tgcataagctctaaaataagttaatccaaacggac 45179124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 15791378 - 15791342
Alignment:
Q  6 ataagctctaaaataagtcaatccaaacggaccctaa 42  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  15791378 ataagctctaaaataagttaatccaaacgggccctaa 15791342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 45267478 - 45267446
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaac 33  Q
    ||||||||||||| |||||||||||||||||||    
T  45267478 tttgcataagctcaaaaataagtcaatccaaac 45267446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 45856194 - 45856222
Alignment:
Q  16 aaataagtcaatccaaacggaccctaatt 44  Q
    |||||||||||||||||||||||||||||    
T  45856194 aaataagtcaatccaaacggaccctaatt 45856222  T

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Target: scaffold0512 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 4071 - 4028
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaacggaccctaatt 44  Q
    |||||||||||||||||||||| |||| ||||||||||||||||    
T  4071 tttgcataagctctaaaataagccaatacaaacggaccctaatt 4028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 716012 - 716051
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaacggaccct 40  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  716012 tttgcataagctttaaaataagtcaatccaaacggaccct 716051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 8011137 - 8011173
Alignment:
Q  5 cataagctctaaaataagtcaatccaaacggacccta 41  Q
    |||||||||||||||||| ||||||||||||||||||    
T  8011137 cataagctctaaaataagccaatccaaacggacccta 8011173  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 15413991 - 15413952
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaacggaccct 40  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  15413991 tttgcataagctctaaaataagtcaatccaaacagaccct 15413952  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 26002996 - 26002957
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaacggaccct 40  Q
    |||| |||||||||||||||||| ||||||||||||||||    
T  26002996 tttgtataagctctaaaataagttaatccaaacggaccct 26002957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 31637163 - 31637201
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaacggaccc 39  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  31637163 tttgcataagctcataaataagtcaatccaaacggaccc 31637201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 1372080 - 1372112
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaac 33  Q
    ||||||||||||| |||||||||||||||||||    
T  1372080 tttgcataagctcaaaaataagtcaatccaaac 1372112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 14243973 - 14244009
Alignment:
Q  5 cataagctctaaaataagtcaatccaaacggacccta 41  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  14243973 cataagctcaaaaataagtctatccaaacggacccta 14244009  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 28625493 - 28625453
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaacggacccta 41  Q
    ||||||||||||  ||||||||||||||||||||| |||||    
T  28625493 tttgcataagctaaaaaataagtcaatccaaacgggcccta 28625453  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 35536992 - 35537028
Alignment:
Q  5 cataagctctaaaataagtcaatccaaacggacccta 41  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  35536992 cataatctcaaaaataagtcaatccaaacggacccta 35537028  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 42706809 - 42706769
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaacggacccta 41  Q
    ||||||||||||| |||||||| |||||||||||| |||||    
T  42706809 tttgcataagctcaaaaataagccaatccaaacgggcccta 42706769  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 35809089 - 35809050
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaacggaccct 40  Q
    |||| ||||||||||||||||| |||||||||||||||||    
T  35809089 tttgtataagctctaaaataagccaatccaaacggaccct 35809050  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 22319378 - 22319416
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaacggaccc 39  Q
    ||||||||| |||||||||||| ||||||||||||||||    
T  22319378 tttgcataaactctaaaataagccaatccaaacggaccc 22319416  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 30181548 - 30181516
Alignment:
Q  2 ttgcataagctctaaaataagtcaatccaaacg 34  Q
    |||||||||||| ||||||||||||||||||||    
T  30181548 ttgcataagctcaaaaataagtcaatccaaacg 30181516  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 38372557 - 38372525
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaac 33  Q
    ||||||||||||| |||||||||||||||||||    
T  38372557 tttgcataagctcaaaaataagtcaatccaaac 38372525  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 18277018 - 18277052
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaacgg 35  Q
    |||||||||||| ||||||||||||||||||||||    
T  18277018 tttgcataagctataaaataagtcaatccaaacgg 18277052  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 38216022 - 38215988
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaacgg 35  Q
    ||||||||||||| |||||||||||||||||||||    
T  38216022 tttgcataagctcaaaaataagtcaatccaaacgg 38215988  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 9140684 - 9140647
Alignment:
Q  3 tgcataagctctaaaataagtcaatccaaacggaccct 40  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  9140684 tgcataagctcaaaaataagtcaatccaaacgggccct 9140647  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 735918 - 735886
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaac 33  Q
    ||||||||||||||||| |||||||||||||||    
T  735918 tttgcataagctctaaattaagtcaatccaaac 735886  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 4533470 - 4533506
Alignment:
Q  5 cataagctctaaaataagtcaatccaaacggacccta 41  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  4533470 cataagctcaaaaataagttaatccaaacggacccta 4533506  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 12223980 - 12224020
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaacggacccta 41  Q
    ||||||||||||| |||||||| ||||||||||| ||||||    
T  12223980 tttgcataagctcaaaaataagccaatccaaacgaacccta 12224020  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 17317188 - 17317156
Alignment:
Q  5 cataagctctaaaataagtcaatccaaacggac 37  Q
    ||||||||| |||||||||||||||||||||||    
T  17317188 cataagctcaaaaataagtcaatccaaacggac 17317156  T

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Target: scaffold0015 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 48844 - 48881
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaacggacc 38  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  48844 tttgtataagctcgaaaataagtcaatccaaacggacc 48881  T

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Target: scaffold1088 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1088
Description:

Target: scaffold1088; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 1293 - 1257
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaacggac 37  Q
    |||||||||||||||||||||||||||  ||||||||    
T  1293 tttgcataagctctaaaataagtcaatttaaacggac 1257  T

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Target: scaffold0091 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 2652 - 2692
Alignment:
Q  1 tttgcataagctctaaaataagtcaatccaaacggacccta 41  Q
    ||||||||| ||||||||||||||||| ||||||| |||||    
T  2652 tttgcataaactctaaaataagtcaatacaaacggccccta 2692  T

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