View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6094_low_18 (Length: 213)
Name: NF6094_low_18
Description: NF6094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6094_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 25074505 - 25074701
Alignment:
| Q |
1 |
ctcctgctttctttgtagccattggttaaaatcgatgggtgtaagataaaaagtggaattcgattgagatgtacgatgttttcttcttcaatacccagct |
100 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25074505 |
ctcctgctttctttttagccattggtttaaatcgatgggtgtaagataaaaagtggaattcgattgagatgtacgatgttttcttcttcaatacccagct |
25074604 |
T |
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| Q |
101 |
gactgtaatatgatctttctctaccctttcatattatactagctatgatatgaatacaacatctcctcattagtattattatggagaaggttaaatt |
197 |
Q |
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| T |
25074605 |
gactgtaatatgatctttctccaccctttcatattatactagctgtgatatgaatacaacatctcctcattagtattattatggagaaggttaaatt |
25074701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 25132474 - 25132670
Alignment:
| Q |
1 |
ctcctgctttctttgtagccattggttaaaatcgatgggtgtaagataaaaagtggaattcgattgagatgtacgatgttttcttcttcaatacccagct |
100 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25132474 |
ctcctgctttctttttagccattggtttaaatcgatgggtgtaagataaaaagtggaattcgattgagatgtacgatgttttcttcttcaatacccagct |
25132573 |
T |
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| Q |
101 |
gactgtaatatgatctttctctaccctttcatattatactagctatgatatgaatacaacatctcctcattagtattattatggagaaggttaaatt |
197 |
Q |
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| T |
25132574 |
gactgtaatatgatctttctccaccctttcatattatactagctgtgatatgaatacaacatctcctcattagtattattatggagaaggttaaatt |
25132670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 2039185 - 2038980
Alignment:
| Q |
1 |
ctcctgctttctttgtagccattggttaaaatcgatgggtgtaagataaaaa---------gtggaattcgattgagatgtacgatgttttcttcttcaa |
91 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
2039185 |
ctcctgctttctttttagccattggtttaaatcgatgggtgtaagataaaaataataaaaagtggaattcgattgagatatacgatgttttcttcttcat |
2039086 |
T |
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| Q |
92 |
tacccagctgactgtaatatgatctttctctaccctttcatattatactagctatgatatgaatacaacatctcctcattagtattattatggagaaggt |
191 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2039085 |
taccgagctgactgtaatatgatctttctctaccctttcatattatactagctgtgatatgaatacaacatctcctcattagtattattatggagaaggt |
2038986 |
T |
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| Q |
192 |
taaatt |
197 |
Q |
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|||||| |
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| T |
2038985 |
taaatt |
2038980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 46 - 182
Target Start/End: Complemental strand, 46994293 - 46994157
Alignment:
| Q |
46 |
ataaaaagtggaattcgattgagatgtacgatgttttcttcttcaatacccagctgactgtaatatgatctttctctaccctttcatattatactagcta |
145 |
Q |
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||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| | |||||| | |
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| T |
46994293 |
ataaaaagtggaattagattgagatatacaatgttttcttcttcaatacccagctgactgtaatatgacctttttctaccctttcatactctactagttg |
46994194 |
T |
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| Q |
146 |
tgatatgaatacaacatctcctcattagtattattat |
182 |
Q |
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|||||||| |||| |||||| |||| |||||||||| |
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| T |
46994193 |
tgatatgagtacaccatctctccatttgtattattat |
46994157 |
T |
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