View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6094_low_3 (Length: 537)
Name: NF6094_low_3
Description: NF6094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6094_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 8 - 485
Target Start/End: Complemental strand, 34148478 - 34147994
Alignment:
| Q |
8 |
gagcagagatagagaggctgattattgagattggtggtgtgaaatccttaataggatgtttacatggaattgcactaatgcgtaaactgaaaaagaatga |
107 |
Q |
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| T |
34148478 |
gagcagagatagagaggctgattattgagattggtggtgtgaaatccttaataggatgtttacatggaattgcactaatgcgtaaactgaaaaagaatga |
34148379 |
T |
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| Q |
108 |
tttgaatttaaccaatgaaataaattcagaagaagaacaaaatccttgtcctagaccagatggattaccaaaatctgctgatgaaatgatggaagaggag |
207 |
Q |
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| T |
34148378 |
tttgaatttaaccaatgaaatatattcagaagaagaacaaaatccttgtcctagaccagatggattaccaaaatctgctgatgaaatgatggaagaggag |
34148279 |
T |
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| Q |
208 |
caagcaaaaatgcctgattcatcgtatactaaacttcttagatccatgggaaagtcacctgcatggtattctgaagcaccagatcatgaaacagattgat |
307 |
Q |
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| T |
34148278 |
caagcaaaaatgcctgattcatcatatactaaacttcttagatccatgggaaagtcacctgcatggtattctgaagcaccagatcatgaaacagattgat |
34148179 |
T |
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| Q |
308 |
gattttgtttcagtttatagggagggattaatgatgtgaatgtgttagtcgtaggctagttatggatatgaatgaattatggaatagctgtataattg-a |
406 |
Q |
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| T |
34148178 |
gattttgtttcagtttatagggagggattaatgatgtgaatgtgttagtcgtaggctagttatggatatgaatgaattatggaatagctgtataattgta |
34148079 |
T |
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| Q |
407 |
g------ttctttctttctttcactttggttattgcttttcataaaatccctatctcatgtaatttcaggaagtaatgtacaggt |
485 |
Q |
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| T |
34148078 |
gttttttttctttctttctttcactttggttattgcttttcataaaatccctatctcatgtaatttcaggaagtaatgtacaggt |
34147994 |
T |
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