View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6094_low_4 (Length: 497)
Name: NF6094_low_4
Description: NF6094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6094_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 9 - 264
Target Start/End: Original strand, 23469744 - 23469999
Alignment:
| Q |
9 |
agcagagactttgagggaggaatatctttgctccaaattaggagcagtgtgttttttaaaagaataagtatcttttaaaagctaaatttccattagaggt |
108 |
Q |
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| T |
23469744 |
agcagagactttgagggaggaatatctttgctccaaagtaggagcaatgtgttttttaaaagaataagtatcttttaaaagctaaatttccatcagaggt |
23469843 |
T |
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| Q |
109 |
tcttttccaaatcaaagaatcttcacagtcttcatcaggaatagttgcagcacaagcaagctaatagtagggaacatcaacaggacatcacgaagaattt |
208 |
Q |
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| T |
23469844 |
tcttttccaaatcaaagaatcttcacagtcttcatcaggaatagttgcagcacaagcaagctaatagtagggaacatcaacaggacatcacgaagaatgt |
23469943 |
T |
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| Q |
209 |
tccagtgaaaattggtgaaatagtattagtcagacacttttgaagggaaagtgttg |
264 |
Q |
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| T |
23469944 |
tccagtgaaaattggtgaaatagtattagtcagacacttttgaagggaaagtgttg |
23469999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 353 - 481
Target Start/End: Original strand, 23470089 - 23470217
Alignment:
| Q |
353 |
tggattattatttttcattgataaacaatctatgacacaagatataaacggagaaataattgtcactattaagcagtagtaattgacacaagatataaat |
452 |
Q |
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| T |
23470089 |
tggattattatttttcattgataaacaatctatgacacaagatataaacggagaaataattgtcactattaagcagtagtaattgacacaagatataaat |
23470188 |
T |
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| Q |
453 |
actttcatgtacttgaagctgctcattct |
481 |
Q |
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| T |
23470189 |
actttcatgtacttgaagctgctcattct |
23470217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 9 - 187
Target Start/End: Original strand, 23402145 - 23402321
Alignment:
| Q |
9 |
agcagagactttgagggaggaatatctttgctccaaattaggagcagtgtgttttttaaaagaataagtatcttttaaaagctaaatttccattagaggt |
108 |
Q |
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| T |
23402145 |
agcaaagactttgagagagggatatctttgctccaaattcggagcattgcgttttttaaaagaataagtatctttt-gaagctaaattgcc--------- |
23402234 |
T |
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| Q |
109 |
tcttttccaaatcaaagaatcttcaca-------gtcttcatcaggaatag----ttgcagcacaagcaagctaatagtagggaacatca |
187 |
Q |
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| T |
23402235 |
---tttccaaatcaaagaatctttacattcttcggtcttcagcaggaatagtaatttgcagcataagcaagctaatagtagggaacatca |
23402321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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