View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6094_low_7 (Length: 375)
Name: NF6094_low_7
Description: NF6094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6094_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 43439374 - 43439016
Alignment:
| Q |
1 |
cttcaattgtgagtccattgtgatgagtattttctttgattgcaaaacttgttgttggactatctaactgtggaagttcaatgagttgtttgttgtccat |
100 |
Q |
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| T |
43439374 |
cttcaattgtgagtccattgtgatgagtattttctttgattgcaaaacttgttgttggactatctaactgtggaagttcaatgagttgtttgttgtccat |
43439275 |
T |
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| Q |
101 |
aataacagcattttggtttaatagaaactgttgatcattgctaaaggggtgactaaaacttgtaccttcagctgaaggattttgaaggagtaaacgattt |
200 |
Q |
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| T |
43439274 |
aacaagagtattttggtttgatagaaactgttgatcattgctaaaggggtgactaaaacttgtaccttcagctgcaggattttgaaggagtaaacgattt |
43439175 |
T |
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| Q |
201 |
tcatgcaaaatatctgtaattgataaaggtcttgttgttgcatagttttgatcatctctgaaaaactgtggttgttgttgattactataccatggttcat |
300 |
Q |
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| T |
43439174 |
tcatgcaaaatatctgtaattgataaaggtcttgttgttgcatagttttgatcatctctgaaatactgtggttgttgttgattactataccatggttcat |
43439075 |
T |
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| Q |
301 |
aacctggcctgtgacttggacttggctttttaaatgccctgcacacaacccatccttct |
359 |
Q |
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| T |
43439074 |
aacctggcctgtgacttggacttggctttttaaatgccctgcacacaacccatccttct |
43439016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 292 - 359
Target Start/End: Original strand, 8724837 - 8724904
Alignment:
| Q |
292 |
atggttcataacctggcctgtgacttggacttggctttttaaatgccctgcacacaacccatccttct |
359 |
Q |
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| T |
8724837 |
atggttcaaaacctggcctgtgacttggactaggctttttaaacgctttgcacacaacctatctttct |
8724904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 8726789 - 8726853
Alignment:
| Q |
286 |
tataccatggttcataacctggcctgtgacttggacttggctttttaaatgccctgcacacaacc |
350 |
Q |
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| T |
8726789 |
tataccatggttcaaaacctggcctctgatttggactacgatttttaaatgctctgaacacaacc |
8726853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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