View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6096_high_1 (Length: 576)
Name: NF6096_high_1
Description: NF6096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6096_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 17 - 569
Target Start/End: Complemental strand, 29242710 - 29242158
Alignment:
| Q |
17 |
acaagatagaaaaactctatatatatttctcatttataaatgtgaaggtacgaatggaaagcaactgttgagttaatgaaagcatacatgtatagagaga |
116 |
Q |
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| T |
29242710 |
acaagatagaaaaaccctatatatatttctcatttataaatgtgaaggtacgaatggaaagcaactgttgagttaatgaaagcatacatatatagagaga |
29242611 |
T |
|
| Q |
117 |
attgactttccctatcaaagacataatataaacagagtcacagagacacacattctgaatctaatgtatagcataggggaaagaaatgnnnnnnntgtaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29242610 |
attgactttccctatcaaagacataatataaacagagtcacagagacacacattctgaatctaatgtatagcataggggaaagaaatgaaaaaaatgtaa |
29242511 |
T |
|
| Q |
217 |
cctaattttaacattggtcccctcatgtgaggcactaatgagatgaaagaaagtgtgtgacaaacacaatagtccaaattgnnnnnnnnggagaggttct |
316 |
Q |
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| T |
29242510 |
cctaattttaacattggtcccctcatgtgaggcactaatgagatgaaagaaagtgtgtgacaaacacaatagtccaaattgaaaaaaaaggagaagttct |
29242411 |
T |
|
| Q |
317 |
tttaccatgaattatatgaagccacaaatgaaaaataactgctcgaagaaagtgcctatggaaacattatgtaaaaggaaataaagggtacaaaaacagg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29242410 |
tttaccatgaattatatgaagccacaaatgaaaaataactgctcgaagaaagtgcctatggaaacattatgtaaaaggaaataaagggtacaaaaacagg |
29242311 |
T |
|
| Q |
417 |
aacaaaagcaaagcagaacacgaatgatattgctggctgactgtgttaaatttgtgtaagagagagaaaaaaggataaataaagaacatgcacctgccac |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29242310 |
aacaaaagcaaagcagaacacgaatgatattgctggctgactgtgttaaatttgtgtaagagagagaaaaaaggataaataaagaacatgcacctgccac |
29242211 |
T |
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| Q |
517 |
gttgtcctagtgaagggtatttagaactttgaagcaataattgagtgatgatg |
569 |
Q |
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| T |
29242210 |
gttgtcctagtgaagggtatttagaactttgaagcaataattgagtgatgatg |
29242158 |
T |
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