View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6096_high_11 (Length: 239)
Name: NF6096_high_11
Description: NF6096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6096_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 44113813 - 44114035
Alignment:
| Q |
1 |
cgcatgacattattgcatatcaagaaaaagaagaagaaaagagtagtttacataccatgaaagtgtcacctatgttaatgactagggcttcaggtctagg |
100 |
Q |
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| T |
44113813 |
cgcatgatattattgcatatcaagaaaaagaagaagaaaagagtagtttacataccatgaaagtgtcacctatgttaatgactagggcttcaggtctagg |
44113912 |
T |
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| Q |
101 |
gcgaacagccacccatttattatctgcaaaaacttcaagacctccaacttgatcttgatgaagaatggttagtgatgttgggtctgagtgagggccagta |
200 |
Q |
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| T |
44113913 |
gcgaacagccacccatttattatctgcaaaaacttcaagacctccaacttgatcttgatgaagaatggttagtgatgttgggtctgagtgagggccagta |
44114012 |
T |
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| Q |
201 |
ccaagtgtgagactagaactttt |
223 |
Q |
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| T |
44114013 |
ccaagtgtgagattagaactttt |
44114035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 40553866 - 40553830
Alignment:
| Q |
127 |
caaaaacttcaagacctccaacttgatcttgatgaag |
163 |
Q |
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| T |
40553866 |
caaaaacttgaagacctccaacttgatcttgatgaag |
40553830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 158
Target Start/End: Original strand, 39315114 - 39315225
Alignment:
| Q |
47 |
tttacataccatgaaagtgtcacctatgttaatgactagggcttcaggtctagggcgaacagccacccatttattatctgcaaaaacttcaagacctcca |
146 |
Q |
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| T |
39315114 |
tttacttaccatgaaggtgtcacctatgttgatgacaaaggtatcaggctttgggggcacagcaagccatttgttgtcagcaaaaacttcaagacctcca |
39315213 |
T |
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| Q |
147 |
acttgatcttga |
158 |
Q |
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| T |
39315214 |
acttgatcttga |
39315225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 205
Target Start/End: Original strand, 39306188 - 39306280
Alignment:
| Q |
113 |
ccatttattatctgcaaaaacttcaagacctccaacttgatcttgatgaagaatggttagtgatgttgggtctgagtgagggccagtaccaag |
205 |
Q |
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| T |
39306188 |
ccatttgttatccacaaaagcttctagacctccaacttgatcttgaaaaagaatggtgactgaggttgggtcacaatgaggaccagtgccaag |
39306280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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