View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6096_high_13 (Length: 214)
Name: NF6096_high_13
Description: NF6096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6096_high_13 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 3512908 - 3512695
Alignment:
| Q |
1 |
tcatcaattctatatattaaattccatgaatctagcaagtcaaggaatataaagaaggagaaggaatatttaccagcaggctgcagaatgctaactctta |
100 |
Q |
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| T |
3512908 |
tcatcaattctttatattaaattccatgaatctagctagtcaaggaatataaagaaggagaaggaatatttaccagcaggctgcagaatgctaactctta |
3512809 |
T |
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| Q |
101 |
acaccatgtttcagtgatttagtaataaagggaacctggcaaatccgaagaaataatatagctgtaataaaactatgaaagagagagtaatataggcata |
200 |
Q |
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| T |
3512808 |
acaccatgtttcagtgatttagtaataaagggaacctggcaaatccgaataaataatatagctgtaataaaactatgaaagagagagtaatataggcata |
3512709 |
T |
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| Q |
201 |
atgaaagtgagtaa |
214 |
Q |
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| T |
3512708 |
atgaaagtgagtaa |
3512695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 185
Target Start/End: Original strand, 3651025 - 3651094
Alignment:
| Q |
112 |
cagtgatttagtaataaagggaacctggcaaatccgaagaaataatatagctgtaataaaactatgaaagagag |
185 |
Q |
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| T |
3651025 |
cagtgacttagtagtaaagggaacctggcaaatcc---gaaataatatagctttaataaaa-tatgaaaaagag |
3651094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 34851974 - 34851916
Alignment:
| Q |
81 |
ctgcagaatgctaactcttaacaccatgtttcagtgatttagtaataaagggaacctgg |
139 |
Q |
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| T |
34851974 |
ctgcaggatgctaaattttaataccatgcctcactgatttagtaataaagggaacctgg |
34851916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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