View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6096_high_4 (Length: 416)
Name: NF6096_high_4
Description: NF6096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6096_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 15 - 384
Target Start/End: Complemental strand, 42683319 - 42682951
Alignment:
| Q |
15 |
aatcacaaccctagatggcaaaatcattgaaaaaccaagtgaatacataaataaatcagaaacattcttaaaattgttatgcatgcaacatattaaatat |
114 |
Q |
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| T |
42683319 |
aatcacaaccctagatggcaaaatcattgaaaaaccaagtgaatacataaataaatcagaaacattcttaaaattgttatgcatgcaacatattaaatat |
42683220 |
T |
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| Q |
115 |
ggttaaacctaaaaataataccattcctattattcttttgacgttcatcaagaatcaaaacatgaaaatatatatatnnnnnnnnnnggagaaaaatgat |
214 |
Q |
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| T |
42683219 |
ggtaaaacctaaaaataataccattcctattattcttttgacgttcatcaagaatcaaaacatgaaaatatatatat-aaaaaaaaaggagaaaaatgat |
42683121 |
T |
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| Q |
215 |
aaacatgaaaatttacctccatttgtgaagtgggtttggtcttgaaatttctgagaacattttctttgagaatgaagtatcttttacgtgagtaatgttg |
314 |
Q |
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| T |
42683120 |
aaacatgaaaatttacctccatttgtgaagtgggtttggtcttgaaatttctgagaacattttctttgagaatgaagtatcttttacgtgagtaatgttg |
42683021 |
T |
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| Q |
315 |
agtaaaccgattagaacgaatgagataaagccacccttccannnnnnnctttactcttagggcttcaaaa |
384 |
Q |
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| T |
42683020 |
agtaaaccgattagaacgaacgagataaagccacccttccatttttttctttactcttagggcttcaaaa |
42682951 |
T |
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