View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6096_low_10 (Length: 250)
Name: NF6096_low_10
Description: NF6096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6096_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 234
Target Start/End: Complemental strand, 2816883 - 2816661
Alignment:
| Q |
12 |
agtgttccctgtaagaatctcttgatttcaaaaactatgaaccatctttcactcatctacttctcatttgtgaaaacaaaatttacgttttgtatgattt |
111 |
Q |
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| T |
2816883 |
agtgttccctgtaagaatctcttgatttcaaaaactatgaaccatctttcattcatctacttctcatttgtgaaaacaaaatttacgttttgtatgattt |
2816784 |
T |
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| Q |
112 |
agagttaattgtgttcagaaatttatttagcaataaatacgatcacaatatctttgaaagagagtgtcatccaagtagttaaatcatacacttttgcttc |
211 |
Q |
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| T |
2816783 |
agagttaattgtgttcagaaatttatttagcaataaatacgatcacaatatctttgaaagagagtgtcatccaagtagttaaatcatacacttttgcttc |
2816684 |
T |
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| Q |
212 |
cagaggatttgaattgttgctat |
234 |
Q |
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| T |
2816683 |
cagaggatttgaattgttgctat |
2816661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 1423485 - 1423626
Alignment:
| Q |
93 |
tttacgttttgtatgatttagagttaattgtgttcagaaatttatttagcaataaatacgatcacaatatctttgaaagagagt--gtcatccaagtagt |
190 |
Q |
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| T |
1423485 |
tttaggttttgtatgatttagagttaatagtgttcagatatttattttaaaataaatatgatcataatatctcttaaagagtatacatgatcctaatagt |
1423584 |
T |
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| Q |
191 |
taaatcatacac-ttttgcttccagaggatttgaattgttgc |
231 |
Q |
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| T |
1423585 |
taaatcatctactttttgcttccaaaggatttgaattgttgc |
1423626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 1423428 - 1423477
Alignment:
| Q |
9 |
ccaagtgttccctgtaagaatctcttgatttcaaaaactatgaaccatct |
58 |
Q |
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| T |
1423428 |
ccaagtgtttcctgtaagaatctcatcatttcaaaaactatgaaccatct |
1423477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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