View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6096_low_11 (Length: 247)

Name: NF6096_low_11
Description: NF6096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6096_low_11
NF6096_low_11
[»] chr5 (12 HSPs)
chr5 (1-231)||(41014992-41015222)
chr5 (12-73)||(18551488-18551549)
chr5 (12-73)||(27731593-27731654)
chr5 (12-73)||(41894417-41894478)
chr5 (18-58)||(7477560-7477600)
chr5 (18-82)||(33216218-33216282)
chr5 (20-74)||(34452006-34452060)
chr5 (27-73)||(39647142-39647188)
chr5 (12-73)||(7430118-7430179)
chr5 (12-69)||(11257732-11257789)
chr5 (12-73)||(40677967-40678028)
chr5 (18-58)||(21047073-21047113)
[»] chr1 (12 HSPs)
chr1 (35-231)||(12113710-12113905)
chr1 (13-73)||(6025971-6026031)
chr1 (18-74)||(35488281-35488337)
chr1 (18-73)||(15956878-15956933)
chr1 (18-73)||(392329-392384)
chr1 (18-73)||(24808349-24808404)
chr1 (27-73)||(46937570-46937616)
chr1 (21-73)||(19484802-19484854)
chr1 (12-74)||(17473137-17473199)
chr1 (12-73)||(47847990-47848050)
chr1 (18-58)||(15606335-15606375)
chr1 (13-73)||(44417797-44417857)
[»] chr6 (22 HSPs)
chr6 (3-93)||(25010372-25010460)
chr6 (12-74)||(2732935-2732997)
chr6 (12-74)||(1912506-1912568)
chr6 (12-73)||(3736992-3737053)
chr6 (12-73)||(33735435-33735496)
chr6 (13-73)||(264555-264615)
chr6 (12-72)||(770343-770403)
chr6 (12-76)||(14399812-14399875)
chr6 (22-74)||(29404955-29405007)
chr6 (13-73)||(29717369-29717429)
chr6 (19-66)||(2231098-2231145)
chr6 (27-73)||(4886210-4886256)
chr6 (13-75)||(9163754-9163816)
chr6 (32-73)||(25100458-25100499)
chr6 (13-58)||(26373098-26373143)
chr6 (20-73)||(26693131-26693184)
chr6 (12-76)||(8432026-8432090)
chr6 (13-73)||(9194433-9194493)
chr6 (13-57)||(9742513-9742557)
chr6 (13-73)||(28502961-28503021)
chr6 (13-73)||(29815366-29815426)
chr6 (9-73)||(33996335-33996399)
[»] chr3 (20 HSPs)
chr3 (19-73)||(14199999-14200053)
chr3 (9-66)||(53855741-53855798)
chr3 (1-73)||(15802573-15802645)
chr3 (12-73)||(51616392-51616453)
chr3 (1-59)||(21754252-21754310)
chr3 (9-55)||(50251552-50251598)
chr3 (12-58)||(50402653-50402699)
chr3 (13-74)||(2990983-2991044)
chr3 (13-58)||(28802774-28802819)
chr3 (20-76)||(41977497-41977553)
chr3 (12-72)||(54375405-54375465)
chr3 (27-62)||(33726903-33726938)
chr3 (31-73)||(22231166-22231208)
chr3 (12-73)||(402833-402894)
chr3 (12-65)||(11314406-11314459)
chr3 (18-54)||(2101664-2101700)
chr3 (18-73)||(7889147-7889200)
chr3 (13-73)||(32954260-32954320)
chr3 (29-73)||(34357978-34358022)
chr3 (13-73)||(43381176-43381236)
[»] chr4 (14 HSPs)
chr4 (22-74)||(55314495-55314547)
chr4 (12-57)||(37579590-37579635)
chr4 (13-56)||(207488-207531)
chr4 (12-59)||(34417347-34417394)
chr4 (27-73)||(47486060-47486106)
chr4 (12-73)||(46714282-46714343)
chr4 (13-73)||(13298529-13298589)
chr4 (13-73)||(34416907-34416967)
chr4 (18-73)||(27722418-27722473)
chr4 (22-73)||(32427122-32427173)
chr4 (12-59)||(34581593-34581640)
chr4 (12-71)||(53768207-53768266)
chr4 (12-72)||(4762551-4762611)
chr4 (12-68)||(34417827-34417883)
[»] chr8 (10 HSPs)
chr8 (11-73)||(45371097-45371159)
chr8 (12-73)||(44806258-44806319)
chr8 (13-77)||(42843360-42843424)
chr8 (9-73)||(21226925-21226989)
chr8 (23-74)||(18737691-18737742)
chr8 (12-73)||(27743150-27743213)
chr8 (13-72)||(32616769-32616828)
chr8 (21-71)||(2449171-2449221)
chr8 (20-73)||(8284356-8284409)
chr8 (1-70)||(30692448-30692517)
[»] chr7 (13 HSPs)
chr7 (12-74)||(1110408-1110470)
chr7 (19-73)||(39417762-39417816)
chr7 (27-71)||(29440328-29440372)
chr7 (13-72)||(28845543-28845602)
chr7 (13-72)||(32888937-32888996)
chr7 (18-60)||(19130231-19130273)
chr7 (19-73)||(23747323-23747377)
chr7 (35-77)||(45056200-45056242)
chr7 (28-70)||(46766698-46766740)
chr7 (12-73)||(7245949-7246010)
chr7 (12-69)||(22697883-22697939)
chr7 (18-74)||(1109355-1109411)
chr7 (12-72)||(33007896-33007955)
[»] chr2 (15 HSPs)
chr2 (13-58)||(33623675-33623720)
chr2 (12-73)||(4204951-4205011)
chr2 (19-72)||(41631891-41631944)
chr2 (12-73)||(44458228-44458289)
chr2 (13-73)||(28044715-28044775)
chr2 (18-73)||(39322405-39322460)
chr2 (19-73)||(29378509-29378563)
chr2 (13-74)||(16733711-16733772)
chr2 (12-57)||(18569435-18569480)
chr2 (13-74)||(31790487-31790548)
chr2 (22-67)||(44415093-44415138)
chr2 (12-73)||(44460331-44460392)
chr2 (12-76)||(26174923-26174986)
chr2 (12-68)||(29728763-29728819)
chr2 (27-59)||(39597591-39597623)
[»] scaffold0940 (1 HSPs)
scaffold0940 (9-55)||(2064-2110)
[»] scaffold0491 (1 HSPs)
scaffold0491 (23-74)||(4390-4441)
[»] scaffold0913 (1 HSPs)
scaffold0913 (13-57)||(1279-1323)
[»] scaffold0898 (1 HSPs)
scaffold0898 (13-57)||(4278-4322)


Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 41014992 - 41015222
Alignment:
Q  1 gctatatcgcagctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaattttgtaacaccacagtgctgcagtgccg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41014992 gctatatcgcagctatatgacaacactttgtactaaatagcatatcacggaacaatagcagtttgttcaaattttgtaacaccacagtgctgcagtgccg 41015091  T
Q  101 ctgtttgacaacattgtaaaaaataacagaaatagtatgaacaaaacaatataagaaacactcatattttgacattaattttcaaatgaaaccgcaatca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41015092 ctgtttgacaacattgtaaaaaataacagaaatagtatgaacaaaacaatataagaaacactcatattttgacattaattttcaaatgaaaccgcaatca 41015191  T
Q  201 aaagtctcaaacatttttcaaaccaaacaat 231  Q
    |||||||||||||||||||||||||||||||    
T  41015192 aaagtctcaaacatttttcaaaccaaacaat 41015222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 18551488 - 18551549
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    ||||||||||||||||||||||||||| ||||||| || ||||||||| ||||||| |||||    
T  18551488 gctatatgacaacactttgtactaaattgcatatctcgaaacaatagctgtttgttaaaatt 18551549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 27731593 - 27731654
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    ||||| |||||| |||||||||||||||||||||||   ||||||||| ||||||| |||||    
T  27731593 gctatttgacaaaactttgtactaaatagcatatcggtaaacaatagcggtttgtttaaatt 27731654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 41894478 - 41894417
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    ||||| ||||||||||||||| |||||||| ||| || |||||||| || ||||||||||||    
T  41894478 gctatttgacaacactttgtagtaaatagcgtattgcagaacaataacaatttgttcaaatt 41894417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 7477560 - 7477600
Alignment:
Q  18 tgacaacactttgtactaaatagcatatcgcggaacaatag 58  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  7477560 tgacaacactttgtactaaatagtaaatcgcggaacaatag 7477600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 33216282 - 33216218
Alignment:
Q  18 tgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaattttgtaacac 82  Q
    ||||||||||||||| |||||||| ||| ||||||||||| || ||||||| |||| ||| ||||    
T  33216282 tgacaacactttgtattaaatagcgtatagcggaacaataacaatttgttccaattctgtcacac 33216218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 34452006 - 34452060
Alignment:
Q  20 acaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaattt 74  Q
    |||| |||||||||||||| |||||||||  |||||||||||||| ||| |||||    
T  34452006 acaatactttgtactaaattgcatatcgctaaacaatagcagttttttcgaattt 34452060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 39647142 - 39647188
Alignment:
Q  27 tttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    |||||||||||||||||||||| |||||||| |  ||||||||||||    
T  39647142 tttgtactaaatagcatatcgcagaacaataacgatttgttcaaatt 39647188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 7430179 - 7430118
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    ||||| ||||||||  |||||||||||||| ||| | ||||||||||| |||||| ||||||    
T  7430179 gctatttgacaacatcttgtactaaatagcgtattgtggaacaatagcggtttgtccaaatt 7430118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 11257789 - 11257732
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttca 69  Q
    ||||| |||||||| |||||||||||||||||||||   |||||||||  ||||||||    
T  11257789 gctatttgacaacattttgtactaaatagcatatcgtataacaatagcgatttgttca 11257732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 40677967 - 40678028
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    ||||| |||||||  ||||||||||| |||| ||||| |||||||  |||||||||||||||    
T  40677967 gctatttgacaactttttgtactaaacagcacatcgcagaacaattccagtttgttcaaatt 40678028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 21047073 - 21047113
Alignment:
Q  18 tgacaacactttgtactaaatagcatatcgcggaacaatag 58  Q
    |||||||| ||| |||||||||||||||| |||||||||||    
T  21047073 tgacaacattttttactaaatagcatatcacggaacaatag 21047113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 35 - 231
Target Start/End: Original strand, 12113710 - 12113905
Alignment:
Q  35 aaatagcatatcgcggaacaatagcagtttgttcaaattttgtaacaccacagtgctgcagtgccgctgtttgacaacattgt-aaaaaataacagaaat 133  Q
    ||||||| |||||| |||||||||||||||||||||||||| | || ||| |||||||||||||| || |||||||||||| | ||||||||||| ||||    
T  12113710 aaatagcgtatcgcagaacaatagcagtttgttcaaattttattacgccatagtgctgcagtgccactatttgacaacattttaaaaaaataacataaat 12113809  T
Q  134 agtatgaacaaaacaatataagaaacactcatattttgacattaattttcaaatgaaaccgcaatcaaaagtctcaaacatttttcaaaccaaacaat 231  Q
    ||||| | ||||||||| |||| ||| |  || |||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12113810 agtataatcaaaacaatttaagtaactcaaat-tttttacattcattttcaaatgaaaccgcaatcaaaagtctc-aacatttttcaaaccaaacaat 12113905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 6025971 - 6026031
Alignment:
Q  13 ctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    |||| |||||||| ||||||||||||||||||||||||||||||| |  ||||||||||||    
T  6025971 ctatttgacaacattttgtactaaatagcatatcgcggaacaataactatttgttcaaatt 6026031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 35488337 - 35488281
Alignment:
Q  18 tgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaattt 74  Q
    |||||| |||| |||||||||||| |||| |||||||||||||||||||||||||||    
T  35488337 tgacaaaacttcgtactaaatagcgtatcccggaacaatagcagtttgttcaaattt 35488281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 15956933 - 15956878
Alignment:
Q  18 tgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    |||||||||||||||||||||||| ||| ||||||||||| || ||||||||||||    
T  15956933 tgacaacactttgtactaaatagcgtatggcggaacaataacaatttgttcaaatt 15956878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 392329 - 392384
Alignment:
Q  18 tgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    |||||||||||||||||| || |  ||||||||||||||||||||||||| |||||    
T  392329 tgacaacactttgtactatattgtgtatcgcggaacaatagcagtttgttaaaatt 392384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 24808404 - 24808349
Alignment:
Q  18 tgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    ||||||||||||| |||||||| |||||||||||| ||||| | ||||||||||||    
T  24808404 tgacaacactttgaactaaataccatatcgcggaataatagtaatttgttcaaatt 24808349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 46937616 - 46937570
Alignment:
Q  27 tttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    |||||||||||||||  ||||||||||||||||| ||||||||||||    
T  46937616 tttgtactaaatagcgcatcgcggaacaatagcactttgttcaaatt 46937570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 19484802 - 19484854
Alignment:
Q  21 caacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    |||||||| ||||||||| ||||||| | |||||||||||||||||| |||||    
T  19484802 caacacttcgtactaaatcgcatatcccagaacaatagcagtttgttaaaatt 19484854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 17473199 - 17473137
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaattt 74  Q
    ||||| |||||| | ||||||||||||||||||| ||  |||||||||| |||||| ||||||    
T  17473199 gctatttgacaatattttgtactaaatagcatattgcaaaacaatagcattttgtttaaattt 17473137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 47847990 - 47848050
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    ||||| |||||||| ||||||| |||| |||||||| |||||||||||  ||||||||||||    
T  47847990 gctatttgacaacattttgtac-aaatggcatatcgtggaacaatagcgatttgttcaaatt 47848050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 15606335 - 15606375
Alignment:
Q  18 tgacaacactttgtactaaatagcatatcgcggaacaatag 58  Q
    |||||||| ||||||||||||||||||| || |||||||||    
T  15606335 tgacaacattttgtactaaatagcatatagcagaacaatag 15606375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 44417857 - 44417797
Alignment:
Q  13 ctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    |||| ||||||||||||| |||||||| |||||| |  ||||||| | |||||||||||||    
T  44417857 ctatttgacaacactttgcactaaataacatatcccaaaacaataacggtttgttcaaatt 44417797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 25010460 - 25010372
Alignment:
Q  3 tatatcgcagctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaattttgtaacaccacagtgctgc 93  Q
    |||| ||| ||||||||||||||||||||| ||||||||||||| ||||||||||  | ||||||||||||  || |||| ||||||||||    
T  25010460 tatagcgccgctatatgacaacactttgtattaaatagcatatcacggaacaata--actttgttcaaattccgttacacaacagtgctgc 25010372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 2732997 - 2732935
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaattt 74  Q
    ||||| |||||||| ||||||||||||||||||||||  |||||||||  |||||||||||||    
T  2732997 gctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaattt 2732935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 1912506 - 1912568
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaattt 74  Q
    ||||| |||||| | |||||||||||||| ||||||| ||||||||||  |||||||||||||    
T  1912506 gctatttgacaataatttgtactaaatagtatatcgcagaacaatagcgatttgttcaaattt 1912568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 3737053 - 3736992
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    ||||||||| || | |||||||| ||||||||||||| |||||||| || ||||||||||||    
T  3737053 gctatatgataatagtttgtactgaatagcatatcgcagaacaataacaatttgttcaaatt 3736992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 33735435 - 33735496
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    ||||| |||||||| |||||||||||||||||||| |||||||| ||  ||||||| |||||    
T  33735435 gctatttgacaacattttgtactaaatagcatatcacggaacaaaagtggtttgttaaaatt 33735496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 264615 - 264555
Alignment:
Q  13 ctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    |||| |||||||||||||||||||||||| || | | |||||||| || ||||||||||||    
T  264615 ctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaatt 264555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 770403 - 770343
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaat 72  Q
    ||||| ||||||| |||||||||||||||| |||| |||||||||| |  |||||||||||    
T  770403 gctatttgacaaccctttgtactaaatagcgtatcacggaacaataccgatttgttcaaat 770343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 14399875 - 14399812
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaattttg 76  Q
    ||||| |||||||||||||||||||||||| |||| |  ||||||||| ||||||| ||||||||    
T  14399875 gctatttgacaacactttgtactaaatagc-tatcacaaaacaatagcggtttgtttaaattttg 14399812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 29404955 - 29405007
Alignment:
Q  22 aacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaattt 74  Q
    |||||||||||||||||| ||||||| | |||||||||| ||| |||||||||    
T  29404955 aacactttgtactaaataacatatcgtgaaacaatagcaattttttcaaattt 29405007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 29717369 - 29717429
Alignment:
Q  13 ctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    |||| ||||||||||||| |||||||  ||||||||||||||||| || |||||| |||||    
T  29717369 ctatttgacaacactttgaactaaatcacatatcgcggaacaatatcaatttgttaaaatt 29717429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 2231098 - 2231145
Alignment:
Q  19 gacaacactttgtactaaatagcatatcgcggaacaatagcagtttgt 66  Q
    ||||||| |||||||||||||||||||||| | |||| ||||||||||    
T  2231098 gacaacattttgtactaaatagcatatcgcaggacaaaagcagtttgt 2231145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 4886256 - 4886210
Alignment:
Q  27 tttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    |||| |||||||||||||||||||||||||||   ||||||||||||    
T  4886256 tttgcactaaatagcatatcgcggaacaatagagatttgttcaaatt 4886210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 9163816 - 9163754
Alignment:
Q  13 ctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatttt 75  Q
    |||| |||||||| ||||||||||||||| |||  |||||||||||   ||||||||||||||    
T  9163816 ctatttgacaacattttgtactaaatagcgtataacggaacaatagggatttgttcaaatttt 9163754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 25100499 - 25100458
Alignment:
Q  32 actaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    |||| ||| |||||||||||||||||||| ||||||||||||    
T  25100499 actatataacatatcgcggaacaatagcaatttgttcaaatt 25100458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 26373143 - 26373098
Alignment:
Q  13 ctatatgacaacactttgtactaaatagcatatcgcggaacaatag 58  Q
    |||| |||||||||||||||||||||||| |||| | |||||||||    
T  26373143 ctatttgacaacactttgtactaaatagcgtatcacagaacaatag 26373098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 26693131 - 26693184
Alignment:
Q  20 acaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    ||||||||||||||||||||||||||   |||||||||||  |||||| |||||    
T  26693131 acaacactttgtactaaatagcatattatggaacaatagcgatttgtttaaatt 26693184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 8432090 - 8432026
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaattttg 76  Q
    ||||| ||||| ||||||||||||| |||||| | || ||| ||||||  |||||||||||||||    
T  8432090 gctatttgacagcactttgtactaattagcatcttgctgaataatagcgatttgttcaaattttg 8432026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 9194433 - 9194493
Alignment:
Q  13 ctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    |||| |||||||| ||||||||||||| | ||| || ||||||||||| ||||||| ||||    
T  9194433 ctatttgacaacattttgtactaaataccgtatagcagaacaatagcaatttgttccaatt 9194493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 9742513 - 9742557
Alignment:
Q  13 ctatatgacaacactttgtactaaatagcatatcgcggaacaata 57  Q
    |||||| | ||||||||||||||||| || |||||||||||||||    
T  9742513 ctatataataacactttgtactaaatggcgtatcgcggaacaata 9742557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 28502961 - 28503021
Alignment:
Q  13 ctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    |||| |||||||||||| |||||||| ||||||| | | |||| ||||||||||| |||||    
T  28502961 ctatttgacaacactttttactaaatcgcatatcactgcacaaaagcagtttgttaaaatt 28503021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 29815366 - 29815426
Alignment:
Q  13 ctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    |||| |||||||||||| |||||||| ||||||| | | |||| ||||||||||| |||||    
T  29815366 ctatttgacaacactttttactaaatcgcatatcactgcacaaaagcagtttgttaaaatt 29815426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 33996335 - 33996399
Alignment:
Q  9 gcagctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    ||||||||  ||||||| |||||| |||| |||  || ||||||||||||| |||||||||||||    
T  33996335 gcagctattagacaacattttgtagtaaaaagcggattgcggaacaatagcggtttgttcaaatt 33996399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 14200053 - 14199999
Alignment:
Q  19 gacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    ||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||    
T  14200053 gacaacactttgtaccaaatagcatatcgcagaacattagcagtttgttcaaatt 14199999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 53855741 - 53855798
Alignment:
Q  9 gcagctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgt 66  Q
    |||||||| |||||||| ||||||||||||||||||| || |||||||||||||||||    
T  53855741 gcagctatttgacaacattttgtactaaatagcatattgcagaacaatagcagtttgt 53855798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 15802645 - 15802573
Alignment:
Q  1 gctatatcgcagctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    |||||| ||| ||||| |||||||||||||||||| ||| |||||||||||| ||||||  ||||||||||||    
T  15802645 gctatagcgctgctatttgacaacactttgtactatataacatatcgcggaagaatagcgatttgttcaaatt 15802573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 51616392 - 51616453
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    ||||| |||||||||| |||| |||||||| ||||| ||||||||| |||||||||||||||    
T  51616392 gctatttgacaacactctgtattaaatagcgtatcgtggaacaataccagtttgttcaaatt 51616453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 21754310 - 21754252
Alignment:
Q  1 gctatatcgcagctatatgacaacactttgtactaaatagcatatcgcggaacaatagc 59  Q
    |||||| ||| ||||| |||||||| ||||||||||||||  |||||||||||||||||    
T  21754310 gctatagcgccgctatttgacaacaatttgtactaaatagtgtatcgcggaacaatagc 21754252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 50251552 - 50251598
Alignment:
Q  9 gcagctatatgacaacactttgtactaaatagcatatcgcggaacaa 55  Q
    |||||||| |||||||| ||| |||||||||||||||||||||||||    
T  50251552 gcagctatttgacaacattttctactaaatagcatatcgcggaacaa 50251598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 50402653 - 50402699
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatag 58  Q
    ||||| |||||||||||| ||||||||||||||| ||||||||||||    
T  50402653 gctatttgacaacactttatactaaatagcatattgcggaacaatag 50402699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 2990983 - 2991044
Alignment:
Q  13 ctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaattt 74  Q
    |||| |||||||| ||||||||||||||| ||||| ||||||| || | |||||||||||||    
T  2990983 ctatttgacaacattttgtactaaatagcgtatcgtggaacaaaagaaatttgttcaaattt 2991044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 28802774 - 28802819
Alignment:
Q  13 ctatatgacaacactttgtactaaatagcatatcgcggaacaatag 58  Q
    |||| |||||||||||| || |||||||||||||||||||||||||    
T  28802774 ctatttgacaacactttatattaaatagcatatcgcggaacaatag 28802819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 41977553 - 41977497
Alignment:
Q  20 acaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaattttg 76  Q
    |||||||||| | | ||||||||| || ||||||||||| |||||||||||||||||    
T  41977553 acaacactttttccaaaatagcatttcacggaacaatagtagtttgttcaaattttg 41977497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 54375465 - 54375405
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaat 72  Q
    ||||| ||| |||| ||||||||||||||| ||| | |||||||||||||||||| |||||    
T  54375465 gctatttgataacattttgtactaaatagcttattggggaacaatagcagtttgtccaaat 54375405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 62
Target Start/End: Complemental strand, 33726938 - 33726903
Alignment:
Q  27 tttgtactaaatagcatatcgcggaacaatagcagt 62  Q
    |||||||||||||| |||||||||||||||||||||    
T  33726938 tttgtactaaatagtatatcgcggaacaatagcagt 33726903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 22231208 - 22231166
Alignment:
Q  31 tactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    ||||||||||||||||||||||||| ||  |||||||||||||    
T  22231208 tactaaatagcatatcgcggaacaacagtggtttgttcaaatt 22231166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 402894 - 402833
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    ||||| |||||| |||||||||||| |||||||| || |||||||  |||||||||| ||||    
T  402894 gctatttgacaaaactttgtactaattagcatatggcagaacaattccagtttgttcgaatt 402833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 11314459 - 11314406
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttg 65  Q
    |||||||||||| ||||||||||||||||| ||| |  ||||||||||| ||||    
T  11314459 gctatatgacaatactttgtactaaatagcgtattgtagaacaatagcaatttg 11314406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 2101664 - 2101700
Alignment:
Q  18 tgacaacactttgtactaaatagcatatcgcggaaca 54  Q
    |||||||||||||||||||||||  ||||||||||||    
T  2101664 tgacaacactttgtactaaatagtgtatcgcggaaca 2101700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 7889200 - 7889147
Alignment:
Q  18 tgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    |||||||||||||||||||    |||||| |||||||||||||||||||| |||||    
T  7889200 tgacaacactttgtactaaca--catatcacggaacaatagcagtttgttgaaatt 7889147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 32954320 - 32954260
Alignment:
Q  13 ctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    ||||||||||||| ||||||||||||||| ||| | |||| || |||| ||||| ||||||    
T  32954320 ctatatgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaatt 32954260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 34357978 - 34358022
Alignment:
Q  29 tgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    |||||||||||| || || ||||||||||||| ||||||||||||    
T  34357978 tgtactaaatagtatttcacggaacaatagcaatttgttcaaatt 34358022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 43381236 - 43381176
Alignment:
Q  13 ctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    |||| |||||||| |||||| ||||| ||||||||||||| ||||||  ||| ||||||||    
T  43381236 ctatttgacaacattttgtattaaattgcatatcgcggaataatagcgatttattcaaatt 43381176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 55314547 - 55314495
Alignment:
Q  22 aacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaattt 74  Q
    ||||||||||||||| ||||||||||| ||||||||||| |||||||||||||    
T  55314547 aacactttgtactaattagcatatcgcagaacaatagcaatttgttcaaattt 55314495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 37579590 - 37579635
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaata 57  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||    
T  37579590 gctatttgacaacacttagtactaaatagcatatcgcggaacaata 37579635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 207531 - 207488
Alignment:
Q  13 ctatatgacaacactttgtactaaatagcatatcgcggaacaat 56  Q
    |||| |||||| ||||||||||||||||||||||||||||||||    
T  207531 ctatttgacaatactttgtactaaatagcatatcgcggaacaat 207488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 34417394 - 34417347
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagc 59  Q
    ||||| ||||||||||||||||||||||||  ||||||||||||||||    
T  34417394 gctatttgacaacactttgtactaaatagcggatcgcggaacaatagc 34417347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 47486060 - 47486106
Alignment:
Q  27 tttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    ||||||||||||||||| ||||||||||||||  |||||||||||||    
T  47486060 tttgtactaaatagcatgtcgcggaacaatagaggtttgttcaaatt 47486106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 46714343 - 46714282
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    ||||| ||||||||||||| | |||||||| | |||||||||||||||||||| ||| ||||    
T  46714343 gctatttgacaacactttgcattaaatagcgtttcgcggaacaatagcagtttcttccaatt 46714282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 13298589 - 13298529
Alignment:
Q  13 ctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    |||| ||||| ||||||||||||||||||||||| | |||||||||   ||||||||||||    
T  13298589 ctatttgacagcactttgtactaaatagcatatcacagaacaatagtgatttgttcaaatt 13298529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 34416967 - 34416907
Alignment:
Q  13 ctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    |||| |||||||||||||||||||||||   ||||||||||||||||  ||||||| ||||    
T  34416967 ctatttgacaacactttgtactaaatagaggatcgcggaacaatagctatttgttccaatt 34416907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 27722418 - 27722473
Alignment:
Q  18 tgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    |||||| | |||||||| |||||||||||| |||||||||||| || |||||||||    
T  27722418 tgacaatattttgtacttaatagcatatcgtggaacaatagcaattagttcaaatt 27722473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 32427122 - 32427173
Alignment:
Q  22 aacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    ||||||||||||||| |||||||| |||||||||||   |||||||||||||    
T  32427122 aacactttgtactaattagcatattgcggaacaataatggtttgttcaaatt 32427173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 34581640 - 34581593
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagc 59  Q
    ||||| |||||||| ||||||||||||||| |||| ||||||||||||    
T  34581640 gctatttgacaacattttgtactaaatagcgtatcacggaacaatagc 34581593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 53768207 - 53768266
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaa 71  Q
    ||||| ||||||||| |||||||| |||||| |||  ||||||||||| |||||||||||    
T  53768207 gctatttgacaacacgttgtactatatagcagatcatggaacaatagcggtttgttcaaa 53768266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 4762551 - 4762611
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaat 72  Q
    ||||| |||||||| ||||||||||||||| ||| ||||| ||||| | |||||| |||||    
T  4762551 gctatttgacaacattttgtactaaatagcgtattgcggagcaataacggtttgtccaaat 4762611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 34417883 - 34417827
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttc 68  Q
    ||||| |||||||||||||||||||||||   ||||| ||||||||||  |||||||    
T  34417883 gctatttgacaacactttgtactaaatagaggatcgcagaacaatagctatttgttc 34417827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 45371097 - 45371159
Alignment:
Q  11 agctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    |||||| |||||||| ||||||||||||||||||| ||||||||||||  |||||| ||||||    
T  45371097 agctatttgacaacattttgtactaaatagcatattgcggaacaatagtggtttgtccaaatt 45371159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 44806319 - 44806258
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    ||||| |||||||||||||||||||||||| ||||| | || | ||||||||||||||||||    
T  44806319 gctatttgacaacactttgtactaaatagcctatcgtgaaatagtagcagtttgttcaaatt 44806258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 42843424 - 42843360
Alignment:
Q  13 ctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaattttgt 77  Q
    |||| |||||||| ||| |||| |||||| |||| ||||||||||||| ||||||||||||||||    
T  42843424 ctatttgacaacaatttatacttaatagcttatcccggaacaatagcaatttgttcaaattttgt 42843360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 21226989 - 21226925
Alignment:
Q  9 gcagctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    |||||||| |||||||| |||||||| |||||| ||| | |||||||||||  ||||||||||||    
T  21226989 gcagctatttgacaacattttgtactgaatagcgtatggaggaacaatagctttttgttcaaatt 21226925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 18737742 - 18737691
Alignment:
Q  23 acactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaattt 74  Q
    |||||| | ||||||||||||||| || |||||||||| |||||||||||||    
T  18737742 acacttagaactaaatagcatatcccgaaacaatagcaatttgttcaaattt 18737691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 27743213 - 27743150
Alignment:
Q  12 gctatatgacaacactttgtact-aaatagcatat-cgcggaacaatagcagtttgttcaaatt 73  Q
    ||||| ||||||||||||||||| |||| |||||| ||||||||||||||| |||||| |||||    
T  27743213 gctatttgacaacactttgtacttaaatcgcatattcgcggaacaatagcaatttgttaaaatt 27743150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 32616769 - 32616828
Alignment:
Q  13 ctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaat 72  Q
    |||| |||||| |||||||||||||||||||| ||| ||||  ||||| |||||||||||    
T  32616769 ctatttgacaatactttgtactaaatagcataacgcagaactgtagcaatttgttcaaat 32616828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 2449221 - 2449171
Alignment:
Q  21 caacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaa 71  Q
    ||||||| |||||||||||| |||||  |||||||||||| ||||||||||    
T  2449221 caacactatgtactaaatagaatatcatggaacaatagcaatttgttcaaa 2449171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 8284356 - 8284409
Alignment:
Q  20 acaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    |||||||||||||||||| ||| |||||||||||||| |   ||||||||||||    
T  8284356 acaacactttgtactaaaaagcgtatcgcggaacaatggtgatttgttcaaatt 8284409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 30692448 - 30692517
Alignment:
Q  1 gctatatcgcagctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaa 70  Q
    |||||| ||| ||||| |||||||||||||||||| ||||||||| ||  |||||||   ||||||||||    
T  30692448 gctatagcgccgctatttgacaacactttgtactacatagcatatggcaaaacaatattggtttgttcaa 30692517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 1110408 - 1110470
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaattt 74  Q
    ||||| ||||||||||| | ||||||||||||||| || |||||||||| |||||||||||||    
T  1110408 gctatttgacaacacttagaactaaatagcatatcccgaaacaatagcaatttgttcaaattt 1110470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 39417816 - 39417762
Alignment:
Q  19 gacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    ||||||| ||||||||| ||||||||||||||||||||||   ||||||||||||    
T  39417816 gacaacattttgtactatatagcatatcgcggaacaatagtgatttgttcaaatt 39417762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 29440328 - 29440372
Alignment:
Q  27 tttgtactaaatagcatatcgcggaacaatagcagtttgttcaaa 71  Q
    ||||||||||||| ||||||| |||||||||||||||| ||||||    
T  29440328 tttgtactaaataacatatcgtggaacaatagcagttttttcaaa 29440372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 28845602 - 28845543
Alignment:
Q  13 ctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaat 72  Q
    |||||| ||||||||||||| |||||| | ||||| |||||||||||| |||||| ||||    
T  28845602 ctatataacaacactttgtagtaaataacgtatcgtggaacaatagcaatttgtttaaat 28845543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 32888996 - 32888937
Alignment:
Q  13 ctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaat 72  Q
    |||| |||||| |||||||||||||||||||||| | |||||| || || ||||||||||    
T  32888996 ctatttgacaatactttgtactaaatagcatatcactgaacaaaagtagcttgttcaaat 32888937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 19130231 - 19130273
Alignment:
Q  18 tgacaacactttgtactaaatagcatatcgcggaacaatagca 60  Q
    |||||||||||||||||||||||| ||| | ||||||||||||    
T  19130231 tgacaacactttgtactaaatagcgtattgtggaacaatagca 19130273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 23747377 - 23747323
Alignment:
Q  19 gacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    ||||||| |||||||||| ||||||||| | ||||||||||  ||||||||||||    
T  23747377 gacaacagtttgtactaactagcatatcacagaacaatagctatttgttcaaatt 23747323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 45056200 - 45056242
Alignment:
Q  35 aaatagcatatcgcggaacaatagcagtttgttcaaattttgt 77  Q
    |||||||||||| ||||||||||||| ||| ||||||||||||    
T  45056200 aaatagcatatcacggaacaatagcaatttcttcaaattttgt 45056242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 46766740 - 46766698
Alignment:
Q  28 ttgtactaaatagcatatcgcggaacaatagcagtttgttcaa 70  Q
    |||||||||| |||||||||||||||||||||  |||||||||    
T  46766740 ttgtactaaacagcatatcgcggaacaatagccatttgttcaa 46766698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 7245949 - 7246010
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    ||||| |||||||||||||||||||||||| ||||||  || ||||||  |||||| |||||    
T  7245949 gctatttgacaacactttgtactaaatagcgtatcgcaaaagaatagcgatttgtttaaatt 7246010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 22697883 - 22697939
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttca 69  Q
    ||||| |||||| | |||||||||| ||||||||||||||||||| | ||||||||||    
T  22697883 gctatttgacaatattttgtactaa-tagcatatcgcggaacaatggaagtttgttca 22697939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 1109355 - 1109411
Alignment:
Q  18 tgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaattt 74  Q
    |||||||| ||||||||||||||  |||||||||||||| |   |||||||||||||    
T  1109355 tgacaacattttgtactaaatagtgtatcgcggaacaatggggatttgttcaaattt 1109411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 33007896 - 33007955
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaat 72  Q
    ||||| |||||||| ||||| |||| |||| |||||||||| |||||| ||||||||||||    
T  33007896 gctatttgacaacattttgtgctaa-tagcttatcgcggaataatagcggtttgttcaaat 33007955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 33623675 - 33623720
Alignment:
Q  13 ctatatgacaacactttgtactaaatagcatatcgcggaacaatag 58  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||    
T  33623675 ctatatgacaacactttgtactaaatagcatatagtggaacaatag 33623720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 4204951 - 4205011
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    ||||| |||||||| ||| |||||||||||||||| |||||||||||| |||| ||||||||    
T  4204951 gctatttgacaacatttt-tactaaatagcatatcacggaacaatagcggttttttcaaatt 4205011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 41631891 - 41631944
Alignment:
Q  19 gacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaat 72  Q
    |||||||||| ||||||||||||||||| |  |||||||||| |||||||||||    
T  41631891 gacaacacttcgtactaaatagcatatcacaaaacaatagcaatttgttcaaat 41631944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 44458228 - 44458289
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    ||||| |||||| |||||||||||||||   ||||||||||||||||| |||||||| ||||    
T  44458228 gctatttgacaatactttgtactaaatattgtatcgcggaacaatagcggtttgttcgaatt 44458289  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 28044715 - 28044775
Alignment:
Q  13 ctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    |||| ||||||||||||||||||||| ||||||| |  |||||||| ||||| ||||||||    
T  28044715 ctatttgacaacactttgtactaaatcgcatatcacaaaacaatagtagtttattcaaatt 28044775  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 39322405 - 39322460
Alignment:
Q  18 tgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    |||||||||| ||||||||| | | |||||| ||| ||||||||||||||||||||    
T  39322405 tgacaacactctgtactaaacaacttatcgcagaaaaatagcagtttgttcaaatt 39322460  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 29378563 - 29378509
Alignment:
Q  19 gacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    ||||| ||||||||| ||||||| |||||| |||||||| || ||||||||||||    
T  29378563 gacaatactttgtacaaaatagcgtatcgcagaacaatatcaatttgttcaaatt 29378509  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 16733711 - 16733772
Alignment:
Q  13 ctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaattt 74  Q
    |||| ||| |||||| |||||||||||||  ||||| ||||||||||| ||| |||||||||    
T  16733711 ctatttgaaaacactgtgtactaaatagcgaatcgcagaacaatagcaatttattcaaattt 16733772  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 18569480 - 18569435
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaata 57  Q
    ||||| |||||||||||| |||||||||||||||| | ||||||||    
T  18569480 gctatttgacaacactttatactaaatagcatatcacagaacaata 18569435  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 31790487 - 31790548
Alignment:
Q  13 ctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaattt 74  Q
    ||||||||||||| ||| ||||||||||  ||| || |||||||||| |||||| |||||||    
T  31790487 ctatatgacaacattttatactaaatagtgtatggcagaacaatagctgtttgtccaaattt 31790548  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 44415093 - 44415138
Alignment:
Q  22 aacactttgtactaaatagcatatcgcggaacaatagcagtttgtt 67  Q
    ||||| |||||||||||||||||| ||||||||||||  |||||||    
T  44415093 aacacattgtactaaatagcatatggcggaacaatagtggtttgtt 44415138  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 44460392 - 44460331
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaatt 73  Q
    ||||| |||||||| ||||||||||||||  ||||  |||||| ||||| ||||||||||||    
T  44460392 gctatttgacaacattttgtactaaatagtgtatcatggaacagtagcattttgttcaaatt 44460331  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 26174986 - 26174923
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaattttg 76  Q
    ||||| ||||||||  || ||||||||||  |||||| ||||||||||| |||||||||||||||    
T  26174986 gctatttgacaacatattatactaaatagtgtatcgcagaacaatagca-tttgttcaaattttg 26174923  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 29728819 - 29728763
Alignment:
Q  12 gctatatgacaacactttgtactaaatagcatatcgcggaacaatagcagtttgttc 68  Q
    ||||| ||| |||||||||||||| || ||| |||||  ||||||||||||||||||    
T  29728819 gctatttgagaacactttgtactacattgcaaatcgcaaaacaatagcagtttgttc 29728763  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 39597623 - 39597591
Alignment:
Q  27 tttgtactaaatagcatatcgcggaacaatagc 59  Q
    ||||||||||||||| |||||||||||||||||    
T  39597623 tttgtactaaatagcgtatcgcggaacaatagc 39597591  T

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Target: scaffold0940 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0940
Description:

Target: scaffold0940; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 2110 - 2064
Alignment:
Q  9 gcagctatatgacaacactttgtactaaatagcatatcgcggaacaa 55  Q
    |||||||| ||||||||||||||| ||||||||||||||| ||||||    
T  2110 gcagctatttgacaacactttgtattaaatagcatatcgcagaacaa 2064  T

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Target: scaffold0491 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 4441 - 4390
Alignment:
Q  23 acactttgtactaaatagcatatcgcggaacaatagcagtttgttcaaattt 74  Q
    |||||| | ||||||||||||||| || |||||||||| |||||||||||||    
T  4441 acacttagaactaaatagcatatcccgaaacaatagcaatttgttcaaattt 4390  T

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Target: scaffold0913 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0913
Description:

Target: scaffold0913; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 1279 - 1323
Alignment:
Q  13 ctatatgacaacactttgtactaaatagcatatcgcggaacaata 57  Q
    |||| |||||||||||||||||||||||  |||| ||||||||||    
T  1279 ctatttgacaacactttgtactaaatagtgtatcacggaacaata 1323  T

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Target: scaffold0898 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0898
Description:

Target: scaffold0898; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 4322 - 4278
Alignment:
Q  13 ctatatgacaacactttgtactaaatagcatatcgcggaacaata 57  Q
    |||| |||||||||||||||||||||||  |||| ||||||||||    
T  4322 ctatttgacaacactttgtactaaatagtgtatcacggaacaata 4278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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