View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6096_low_12 (Length: 245)
Name: NF6096_low_12
Description: NF6096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6096_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 37618443 - 37618673
Alignment:
| Q |
1 |
aatattttgcttgtcaatttactagtgtttacttcatttttcaaattcaaataatgtatttcaaaattaatttctgccaataacattacaaatttcatac |
100 |
Q |
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| T |
37618443 |
aatattttgattgtcaatttactagtgtttacttcatttttcaaattcaaataatgtatttcaaaattaatttctgccaataacattacaaatttcatac |
37618542 |
T |
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| Q |
101 |
ttctttctgtctattactaagttataagaaatactacatttcataactagtttatttgatttgtttaggtggtggaaagagttgggacttgttgaaaaac |
200 |
Q |
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| T |
37618543 |
ttctttctgtctattactatgttataagaaatgctacatttcataactagtttatttgatttgtttaggtggtggaaagagttgggacttgttgaaaaac |
37618642 |
T |
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| Q |
201 |
ttggttttgcaagagatagaccaacagagtg |
231 |
Q |
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| T |
37618643 |
ttggttttgcaagagatagaccaacagagtg |
37618673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 37626982 - 37627087
Alignment:
| Q |
127 |
agaaatactacatttcataactagtttatttgattt-gtttaggtggtggaaagagttgggacttgttgaaaaacttggttttgcaagagatagaccaac |
225 |
Q |
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| T |
37626982 |
agaaatgctacattttgtaactaatttattggattttgtttaggtggtcgaaagagttgggacttattgaaagactaagttttgcaagagatagaccaac |
37627081 |
T |
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| Q |
226 |
agagtg |
231 |
Q |
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| T |
37627082 |
agagtg |
37627087 |
T |
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