View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6096_low_15 (Length: 225)
Name: NF6096_low_15
Description: NF6096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6096_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 1e-98; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 11640089 - 11639900
Alignment:
| Q |
18 |
gaagatttgattttgccttgttgatgatcgacaaggcgaagatagtattcatctatagcatcttccatgtcttgagcaatatctcttactcttttaaccc |
117 |
Q |
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| T |
11640089 |
gaagatttgattttgccttgttgatgatcgacaaggcgaagatagtattcatctatagcatcttccatgtcttgagcaatatctcttactcttttaaccc |
11639990 |
T |
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| Q |
118 |
atactttgagttcagggtctttgtcttccaatgaatcagctaacatcaagatggccttgtggcgttcgagttcgtctttgatgtattgaa |
207 |
Q |
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| T |
11639989 |
atactttgagttcagggtctttgtcttccaatgaatcagctaacatcaagatggacttgtggcgttcaagttcgtctttgatgtattgaa |
11639900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 11621597 - 11621409
Alignment:
| Q |
19 |
aagatttgattttgccttgttgatgatcgacaaggcgaagatagtattcatctatagcatcttccatgtcttgagcaatatctcttactcttttaaccca |
118 |
Q |
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| T |
11621597 |
aagatctgatttttccttgttgatgatcgacaaggcgaagatagtattcatctatagcatcttccatgtcttgagcaataactctaacccttttaaccca |
11621498 |
T |
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| Q |
119 |
tactttgagttcagggtctttgtcttccaatgaatcagctaacatcaagatggccttgtggcgttcgagttcgtctttgatgtattgaa |
207 |
Q |
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| T |
11621497 |
tactttgagttcagggtctttgtcttccattgaatcagctgccatcaagatggccttgtggcgttcgagttcgtcgttgatgtattgaa |
11621409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 33 - 207
Target Start/End: Original strand, 11605990 - 11606164
Alignment:
| Q |
33 |
ccttgttgatgatcgacaaggcgaagatagtattcatctatagcatcttccatgtcttgagcaatatctcttactcttttaacccatactttgagttcag |
132 |
Q |
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| T |
11605990 |
ccttgtcgatgatcgacaaggcgaagattgtattcatctatagcatcttccatatcttgagcaatatctcttacccttttaacccatactttgagttcag |
11606089 |
T |
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| Q |
133 |
ggtctttgtcttccaatgaatcagctaacatcaagatggccttgtggcgttcgagttcgtctttgatgtattgaa |
207 |
Q |
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| T |
11606090 |
gatctttgtcttccaatgcatcatctctcgttaagatggcattgtggcgtttgagttcgtctttgatgtattgaa |
11606164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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