View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6096_low_2 (Length: 534)
Name: NF6096_low_2
Description: NF6096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6096_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 5e-85; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 18 - 181
Target Start/End: Complemental strand, 38097410 - 38097247
Alignment:
| Q |
18 |
attcatggcacaatcatatatagaagaatgaaaattacccgaggagcataagagaaagaagtttgtgccaaagcaggagtactatcattagtttgtcgcc |
117 |
Q |
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| T |
38097410 |
attcatggcacaatcatatatagaagaatgaaaattatccgaggagcataagagaaagaagtttgtgccaaagcaggagtactatcattagtttgtcgcc |
38097311 |
T |
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| Q |
118 |
tagtgaatacaacctctaagttgttgcaattagataaatgactctaagtagagtcatcaataat |
181 |
Q |
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| T |
38097310 |
tagtgaatacaacctctaagttgttgcaattagataaatgactctaagtagagtcatcaataat |
38097247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 376 - 517
Target Start/End: Complemental strand, 38096967 - 38096829
Alignment:
| Q |
376 |
gaccagaccagaccagatcaccatcatttcctactctctttggatgatttcataagcggtatgcatttctctttcactnnnnnnnnttttgcctccctct |
475 |
Q |
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| T |
38096967 |
gaccagaccataccagatcaccatcatttcctactctctttggatgatttcataagcggtatgcatttctctttcact---cccccttttgcctccctct |
38096871 |
T |
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| Q |
476 |
tttcctcttttgtttcctttaacttcacctcatccatcccta |
517 |
Q |
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| T |
38096870 |
tttcctcttttgtttcctttaacttcacctcatccatcccta |
38096829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 228 - 355
Target Start/End: Complemental strand, 38097152 - 38097020
Alignment:
| Q |
228 |
aggcttgcattaaggtcacaaatgcactttactaaataagatga-----aatcgagatttgaagagaaattaatattacatgcatcaacctataattgct |
322 |
Q |
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| T |
38097152 |
aggcttgcattaaggtcagaaatgcactttactaaataagatgagatgaaatcgggatttgaaaagaaattaatattacatgcatcaacctataattgct |
38097053 |
T |
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| Q |
323 |
agtgtactcattacatattctacctagactaga |
355 |
Q |
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| T |
38097052 |
agtgtactcattacatattctacctagactaga |
38097020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 6783773 - 6783852
Alignment:
| Q |
64 |
cataagagaaagaagtttgtgccaaagcaggagtactatcattagtttgtcgcctagtgaatacaacctctaagttgttg |
143 |
Q |
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| T |
6783773 |
cataagagatagaagtttgtgccaaaacatgagctccatcattagtttttcgcctggtgaaaacaacttgaaagttgttg |
6783852 |
T |
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