View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6096_low_3 (Length: 495)
Name: NF6096_low_3
Description: NF6096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6096_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 279
Target Start/End: Complemental strand, 44113786 - 44113526
Alignment:
| Q |
19 |
aagaataagtttacatttgatcaacaacaccgaaaaaatattgtaacaaggtttctagtgcaaattagatatcatattatcaaatataattttatattat |
118 |
Q |
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| T |
44113786 |
aagaataagtttacatttgatcaacaacaccgaaaaaatattgtaacaaggtttctagtgcaaattagatatcatattatcaaatataattttatattat |
44113687 |
T |
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| Q |
119 |
taatgaaaatgacatgtcatnnnnnnntaactctcaatcgattatggaaaaaatctaagatttgttaaattaggaaactaaaatgtatttaagtctattt |
218 |
Q |
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| T |
44113686 |
taatgaaaatgacatgtcataaaaaaataagtctcgatcgattatggaaaaaatctaagatttgttaaattaggaaactaaaatgtatttaagtctattt |
44113587 |
T |
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| Q |
219 |
aaaattagcctaataaattgatatggtgatttctctctatataagcaaaagatactttgtc |
279 |
Q |
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| T |
44113586 |
aaaattagcctaataaattgatatggtgatttctctctatataagcaaaagatactttgtc |
44113526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 363 - 486
Target Start/End: Complemental strand, 44113437 - 44113314
Alignment:
| Q |
363 |
gcaacttaattcatttaagcatgtgcatatcacttttacacaagtaactttaataagttttactaataaaactccaaaaataagttttactaatattagc |
462 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44113437 |
gcaacttaattcatttaagcatgtgcatatcacttttacacaagtaactttaataagttttactaataaaactccaaaaataagttttactaatattagc |
44113338 |
T |
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| Q |
463 |
cacaaagaaagtcaatagtattat |
486 |
Q |
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| T |
44113337 |
cacaaagaaagtcaatagtattat |
44113314 |
T |
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