View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6096_low_9 (Length: 257)
Name: NF6096_low_9
Description: NF6096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6096_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 37618346 - 37618106
Alignment:
| Q |
1 |
tgctaatttaattttttggtagtgtgacatgatattcaatattgatttacatctggtgttattatagtgtaatgcaaccaatccatccaatacacactta |
100 |
Q |
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| T |
37618346 |
tgctaatttaattttttggtagtgtgacatgatattcaatattgatttacatctggtgttattatagtgtaatgcaaccaatccatccaatacacactta |
37618247 |
T |
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| Q |
101 |
attcaattttttattatagtgtaatcttgagcataaagtcacctgcagatttctgttaattctctttggtgtaatgactgaaccatatcagagtctaact |
200 |
Q |
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| T |
37618246 |
attcaattttttattatagtgtaatcttgagcataaagtcacctgcatatttctgctaattctctttggtgtaatgactgaaccatatcagagtctaact |
37618147 |
T |
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| Q |
201 |
ttgccaattccagaagagcaggtatttggttacttcctttg |
241 |
Q |
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| T |
37618146 |
ttgccaattccagaagagcaggtatttggttacttcctttg |
37618106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 71 - 241
Target Start/End: Complemental strand, 37626658 - 37626488
Alignment:
| Q |
71 |
aatgcaaccaatccatccaatacacacttaattcaattttttattatagtgtaatcttgagcataaagtcacctgcagatttctgttaattctctttggt |
170 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37626658 |
aatgcaaccaatccattcaatacacacttaattcaattttttattatagtgtaatcttgagcataaagtcacctgcagatttctgttaattctctttggt |
37626559 |
T |
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| Q |
171 |
gtaatgactgaaccatatcagagtctaactttgccaattccagaagagcaggtatttggttacttcctttg |
241 |
Q |
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| T |
37626558 |
gtaatgactgaaccatatcagagtctaactttgccaattccagaagagcaggtatttggttacttcctttg |
37626488 |
T |
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