View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6097_low_3 (Length: 208)

Name: NF6097_low_3
Description: NF6097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6097_low_3
NF6097_low_3
[»] chr5 (16 HSPs)
chr5 (1-200)||(20772834-20773033)
chr5 (1-200)||(20781609-20781808)
chr5 (5-183)||(24929923-24930102)
chr5 (1-157)||(19236807-19236964)
chr5 (2-191)||(28889329-28889519)
chr5 (2-191)||(28896033-28896223)
chr5 (2-191)||(28909281-28909471)
chr5 (2-191)||(28924859-28925049)
chr5 (2-191)||(28945676-28945866)
chr5 (1-151)||(22461069-22461220)
chr5 (1-151)||(22467693-22467844)
chr5 (2-177)||(20820105-20820279)
chr5 (2-177)||(20827205-20827379)
chr5 (120-191)||(28931092-28931163)
chr5 (3-39)||(34830110-34830146)
chr5 (11-63)||(18407944-18407996)
[»] chr6 (11 HSPs)
chr6 (1-198)||(9099062-9099260)
chr6 (1-200)||(21364473-21364670)
chr6 (1-200)||(23968455-23968652)
chr6 (1-199)||(20007937-20008138)
chr6 (1-69)||(31252419-31252487)
chr6 (1-63)||(15458492-15458554)
chr6 (1-63)||(15465087-15465149)
chr6 (3-56)||(10986173-10986226)
chr6 (4-63)||(11288662-11288721)
chr6 (141-183)||(29097747-29097789)
chr6 (1-38)||(28288500-28288537)
[»] chr3 (12 HSPs)
chr3 (1-198)||(19235059-19235257)
chr3 (1-180)||(12033435-12033616)
chr3 (1-180)||(17131615-17131796)
chr3 (1-180)||(14865729-14865910)
chr3 (5-71)||(13312891-13312957)
chr3 (1-69)||(10389434-10389502)
chr3 (1-69)||(10414523-10414591)
chr3 (1-69)||(10421193-10421261)
chr3 (5-118)||(13323782-13323896)
chr3 (5-71)||(13302235-13302301)
chr3 (4-73)||(51301581-51301650)
chr3 (5-62)||(24933823-24933880)
[»] scaffold0029 (2 HSPs)
scaffold0029 (1-200)||(91193-91394)
scaffold0029 (1-200)||(96919-97120)
[»] scaffold0384 (1 HSPs)
scaffold0384 (5-193)||(16059-16247)
[»] chr7 (14 HSPs)
chr7 (1-200)||(2465226-2465425)
chr7 (2-200)||(3857357-3857556)
chr7 (1-180)||(16090958-16091139)
chr7 (1-180)||(29181100-29181281)
chr7 (2-180)||(20906453-20906632)
chr7 (1-97)||(2971222-2971318)
chr7 (1-63)||(31155396-31155458)
chr7 (1-69)||(14319620-14319688)
chr7 (105-180)||(2966848-2966925)
chr7 (1-38)||(14230808-14230845)
chr7 (11-63)||(11382871-11382923)
chr7 (11-63)||(11389348-11389400)
chr7 (11-63)||(13679496-13679548)
chr7 (3-63)||(21230952-21231012)
[»] scaffold0053 (1 HSPs)
scaffold0053 (1-180)||(79481-79662)
[»] chr4 (2 HSPs)
chr4 (1-180)||(16146821-16147002)
chr4 (3-68)||(27906263-27906328)
[»] scaffold1469 (1 HSPs)
scaffold1469 (1-193)||(1227-1419)
[»] chr1 (4 HSPs)
chr1 (1-180)||(20851123-20851304)
chr1 (1-178)||(21710704-21710882)
chr1 (1-157)||(20857750-20857907)
chr1 (1-157)||(21706183-21706340)
[»] scaffold0131 (1 HSPs)
scaffold0131 (1-170)||(892-1061)
[»] chr8 (4 HSPs)
chr8 (1-180)||(24320661-24320842)
chr8 (11-71)||(29643386-29643446)
chr8 (5-63)||(44477625-44477683)
chr8 (5-63)||(44492783-44492841)
[»] scaffold0072 (1 HSPs)
scaffold0072 (1-180)||(49961-50143)
[»] chr2 (6 HSPs)
chr2 (1-180)||(25180920-25181101)
chr2 (1-180)||(10460-10641)
chr2 (1-69)||(27207710-27207778)
chr2 (3-39)||(26885208-26885244)
chr2 (3-36)||(23168291-23168324)
chr2 (3-36)||(23579548-23579581)
[»] scaffold0023 (1 HSPs)
scaffold0023 (1-150)||(135352-135502)
[»] scaffold0348 (1 HSPs)
scaffold0348 (5-180)||(9219-9396)
[»] scaffold1318 (1 HSPs)
scaffold1318 (1-150)||(1903-2053)
[»] scaffold0183 (1 HSPs)
scaffold0183 (1-63)||(6-68)
[»] scaffold0099 (1 HSPs)
scaffold0099 (12-183)||(12836-13019)
[»] scaffold0609 (1 HSPs)
scaffold0609 (1-69)||(5848-5916)
[»] scaffold0249 (1 HSPs)
scaffold0249 (1-63)||(13885-13947)
[»] scaffold0127 (1 HSPs)
scaffold0127 (5-73)||(10231-10299)
[»] scaffold0720 (1 HSPs)
scaffold0720 (1-69)||(3393-3461)
[»] scaffold0001 (1 HSPs)
scaffold0001 (3-39)||(493021-493057)
[»] scaffold0026 (1 HSPs)
scaffold0026 (4-63)||(111688-111747)
[»] scaffold0261 (1 HSPs)
scaffold0261 (3-69)||(23562-23628)
[»] scaffold0090 (1 HSPs)
scaffold0090 (10-63)||(18172-18225)
[»] scaffold0317 (1 HSPs)
scaffold0317 (11-63)||(1389-1441)
[»] scaffold0107 (1 HSPs)
scaffold0107 (3-63)||(40524-40584)


Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 20773033 - 20772834
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaa 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||| ||    
T  20773033 tttgcaattctaaggtaagggtgggattatctttcaatagttataatatatgatttctgaaaattaatcaatttaactgttcttaaggtaaaattgggaa 20772934  T
Q  101 atttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttataatgttgcatttgatgattaatatgatttcctactctgtattgatgatgt 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||| ||||||    
T  20772933 atttagggttaatgatgattttgaagaaaatgtgtaagaatcaggtttataatgttgtatttgatgattagtatgatttcctactctatattgttgatgt 20772834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 20781808 - 20781609
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaa 100  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||| ||    
T  20781808 tttgcaattctaaggtaagggtgggattatctttcaataattataatatatgatttctgaaaattaatcaatttaactgttcttaaggtaaaattgggaa 20781709  T
Q  101 atttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttataatgttgcatttgatgattaatatgatttcctactctgtattgatgatgt 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||| ||||||    
T  20781708 atttagggttaatgatgattttgaagaaaatgtgtaagaatcaggtttataatgttgtatttgatgattattatgatttcctactctatattgttgatgt 20781609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 5 - 183
Target Start/End: Original strand, 24929923 - 24930102
Alignment:
Q  5 caattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagt-aatcaatttaactgtttttaaggtaaaattggaaaatt 103  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||| | |||| | |||||||||||||||| ||||||||||||||| |||||    
T  24929923 caattctaaggtaagggtgggattatctttcaatagttctaatatatgatttctaaaaaattaatcaatttaactgttcttaaggtaaaattgggaaatt 24930022  T
Q  104 tagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttataatgttgcatttgatgattaatatgatttccta 183  Q
    ||||||||||||||| | ||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  24930023 tagggttaatgatgattctgaaggaaatgtgtaagaatcaggtttataatgttgtatttgatgattagtatgatttccta 24930102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 19236964 - 19236807
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaa 100  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||| ||||||||| ||||||| ||||||||||||||| ||    
T  19236964 tttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatcaattgaactgttcttaaggtaaaattgggaa 19236865  T
Q  101 atttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggtttataatgttg 157  Q
    |||||||||||| ||||| |||| ||||||| || |||| |||||||||||| |||||    
T  19236864 atttagggttaaggatgattttgaaagaaaaggtataaggatcaggtttatattgttg 19236807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 2 - 191
Target Start/End: Original strand, 28889329 - 28889519
Alignment:
Q  2 ttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggt-aaaattggaaa 100  Q
    |||||||||||||||||||||| ||| ||||||||||||| ||| |||||||||| |||||| ||| | |||||| |||| ||||||| |||||||| ||    
T  28889329 ttgcaattctaaggtaagggtgggatcatctttcaatagtgatattatatgatttctgaaaattaaactatttaattgttcttaaggtaaaaattgggaa 28889428  T
Q  101 atttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttataatgttgcatttgatgattaatatgatttcctactctgtat 191  Q
    | ||||| || ||||||| ||||||||||||| |||| | |||||||||| | |||| |||| ||||||| |||||||||||| |||||||    
T  28889429 aattaggtttgatgatgattttgaagaaaatgcgtaaaattcaggtttatgacgttgtatttaatgattagtatgatttcctaatctgtat 28889519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 2 - 191
Target Start/End: Original strand, 28896033 - 28896223
Alignment:
Q  2 ttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggt-aaaattggaaa 100  Q
    |||||||||||||||||||||| ||| ||||||||||||| ||| |||||||||| |||||| ||| | |||||| |||| ||||||| |||||||| ||    
T  28896033 ttgcaattctaaggtaagggtgggatcatctttcaatagtgatattatatgatttctgaaaattaaactatttaattgttcttaaggtaaaaattgggaa 28896132  T
Q  101 atttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttataatgttgcatttgatgattaatatgatttcctactctgtat 191  Q
    | ||||| || ||||||| ||||||||||||| |||| | |||||||||| | |||| |||| ||||||| |||||||||||| |||||||    
T  28896133 aattaggtttgatgatgattttgaagaaaatgcgtaaaattcaggtttatgacgttgtatttaatgattagtatgatttcctaatctgtat 28896223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 2 - 191
Target Start/End: Original strand, 28909281 - 28909471
Alignment:
Q  2 ttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggt-aaaattggaaa 100  Q
    |||||||||||||||||||||| ||| ||||||||||||| ||| |||||||||| |||||| ||| | |||||| |||| ||||||| |||||||| ||    
T  28909281 ttgcaattctaaggtaagggtgggatcatctttcaatagtgatattatatgatttctgaaaattaaactatttaattgttcttaaggtaaaaattgggaa 28909380  T
Q  101 atttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttataatgttgcatttgatgattaatatgatttcctactctgtat 191  Q
    | ||||| || ||||||| ||||||||||||| |||| | |||||||||| | |||| |||| ||||||| |||||||||||| |||||||    
T  28909381 aattaggtttgatgatgattttgaagaaaatgcgtaaaattcaggtttatgacgttgtatttaatgattagtatgatttcctaatctgtat 28909471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 2 - 191
Target Start/End: Original strand, 28924859 - 28925049
Alignment:
Q  2 ttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggt-aaaattggaaa 100  Q
    |||||||||||||||||||||| ||| ||||||||||||| ||| |||||||||| |||||| ||| | |||||| |||| ||||||| |||||||| ||    
T  28924859 ttgcaattctaaggtaagggtgggatcatctttcaatagtgatattatatgatttctgaaaattaaactatttaattgttcttaaggtaaaaattgggaa 28924958  T
Q  101 atttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttataatgttgcatttgatgattaatatgatttcctactctgtat 191  Q
    | ||||| || ||||||| ||||||||||||| |||| | |||||||||| | |||| |||| ||||||| |||||||||||| |||||||    
T  28924959 aattaggtttgatgatgattttgaagaaaatgcgtaaaattcaggtttatgacgttgtatttaatgattagtatgatttcctaatctgtat 28925049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 2 - 191
Target Start/End: Original strand, 28945676 - 28945866
Alignment:
Q  2 ttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggt-aaaattggaaa 100  Q
    |||||||||||||||||||||| ||| ||||||||||||| ||| |||||||||| |||||| ||| | |||||| |||| ||||||| |||||||| ||    
T  28945676 ttgcaattctaaggtaagggtgggatcatctttcaatagtgatattatatgatttctgaaaattaaactatttaattgttcttaaggtaaaaattgggaa 28945775  T
Q  101 atttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttataatgttgcatttgatgattaatatgatttcctactctgtat 191  Q
    | ||||| || ||||||| ||||||||||||| |||| | |||||||||| | |||| |||| ||||||| |||||||||||| |||||||    
T  28945776 aattaggtttgatgatgattttgaagaaaatgcgtaaaattcaggtttatgacgttgtatttaatgattagtatgatttcctaatctgtat 28945866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 22461220 - 22461069
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagt-aatcaatttaactgtttttaaggtaaaattggaa 99  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||| | |||||||| ||||||| ||||||||||||||| |    
T  22461220 tttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaaattaatcaattgaactgttcttaaggtaaaattggga 22461121  T
Q  100 aatttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttata 151  Q
    ||||||||||||| ||||| ||  ||||||| || |||| ||||||||||||    
T  22461120 aatttagggttaaggatgatttgaaagaaaaggtataaggatcaggtttata 22461069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 22467844 - 22467693
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagt-aatcaatttaactgtttttaaggtaaaattggaa 99  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||| | |||||||| ||||||| ||||||||||||||| |    
T  22467844 tttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaaattaatcaattgaactgttcttaaggtaaaattggga 22467745  T
Q  100 aatttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttata 151  Q
    ||||||||||||| ||||| ||  ||||||| || |||| ||||||||||||    
T  22467744 aatttagggttaaggatgatttgaaagaaaaggtataaggatcaggtttata 22467693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 177
Target Start/End: Complemental strand, 20820279 - 20820105
Alignment:
Q  2 ttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaaa 101  Q
    |||||||||||||||||||||| ||| |||||||||||||  |||||||| |||| |||  | |||  |||| ||| ||| |||||||||||||||||||    
T  20820279 ttgcaattctaaggtaagggtgggatcatctttcaatagtgttaatatataatttctgatgattaagtaattcaaccgttcttaaggtaaaattggaaaa 20820180  T
Q  102 tttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttataatgttgcatttgatgattaatatgat 177  Q
     |||||||||||||||| |||||||| ||||  ||||| ||||||||||||||||| |||||||||| | ||||||    
T  20820179 -ttagggttaatgatgattttgaagagaatgcataagattcaggtttataatgttgtatttgatgatgagtatgat 20820105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 177
Target Start/End: Complemental strand, 20827379 - 20827205
Alignment:
Q  2 ttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaaa 101  Q
    |||||||||||||||||||||| ||| |||||||||||||  |||||||| |||| |||  | |||  |||| ||| ||| |||||||||||||||||||    
T  20827379 ttgcaattctaaggtaagggtgggatcatctttcaatagtgttaatatataatttctgatgattaagtaattcaaccgttcttaaggtaaaattggaaaa 20827280  T
Q  102 tttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttataatgttgcatttgatgattaatatgat 177  Q
     |||||||||||||||| |||||||| ||||  ||||| ||||||||||||||||| |||||||||| | ||||||    
T  20827279 -ttagggttaatgatgattttgaagagaatgcataagattcaggtttataatgttgtatttgatgatgagtatgat 20827205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 28931092 - 28931163
Alignment:
Q  120 tttgaagaaaatgtgtaagaatcaggtttataatgttgcatttgatgattaatatgatttcctactctgtat 191  Q
    ||||||||||||| |||| | |||||||||| | |||| |||| ||||||| |||||||||||| |||||||    
T  28931092 tttgaagaaaatgggtaaaattcaggtttatgacgttgtatttaatgattagtatgatttcctaatctgtat 28931163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 34830146 - 34830110
Alignment:
Q  3 tgcaattctaaggtaagggtgagattatctttcaata 39  Q
    ||||||||||||||||||||| |||||||||||||||    
T  34830146 tgcaattctaaggtaagggtgggattatctttcaata 34830110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 18407944 - 18407996
Alignment:
Q  11 taaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaa 63  Q
    |||||||||||||||| ||||| |||||| | ||||||||| |||| ||||||    
T  18407944 taaggtaagggtgagactatctctcaataatcataatatataatttctgaaaa 18407996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 9099062 - 9099260
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagt-aatcaatttaactgtttttaaggtaaaattggaa 99  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| | |||||||||||||||| ||||||||||||||| |    
T  9099062 tttgcaattctaaggtaagggtgggattatctttcaatagttataatatatgatttctgaaaaattaatcaatttaactgttcttaaggtaaaattggga 9099161  T
Q  100 aatttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttataatgttgcatttgatgattaatatgatttcctactctgtattgatgat 198  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||| ||||| ||||    
T  9099162 aatttagggttaatgatgattctgaagaaaatgtgtaagaatcaggtttataatgttgtatttgatgattagtatgatttcctaatctatattgttgat 9099260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 21364473 - 21364670
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaa 100  Q
    |||||||||| |||||||||||| ||||||| |||| || | |||||||||||||| |||||| ||| ||||||||||||||| | ||||||||||| ||    
T  21364473 tttgcaattcaaaggtaagggtgggattatccttcagtaatgataatatatgatttctgaaaattaagcaatttaactgtttt-atggtaaaattgggaa 21364571  T
Q  101 atttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttataatgttgcatttgatgattaatatgatttcctactctgtattgatgatgt 200  Q
    ||| ||||||||||     |||||||||||| ||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  21364572 att-agggttaatggcatttttgaagaaaatatgtaagacttaggtttataatgttgtatttgatgattaatatgatttcctactctgtattgttgatgt 21364670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 23968455 - 23968652
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaa 100  Q
    |||||||||| |||||||||||| ||||||| |||| || | |||||||||||||| |||||| ||| ||||||||||||||| | ||||||||||| ||    
T  23968455 tttgcaattcaaaggtaagggtgggattatccttcagtaatgataatatatgatttctgaaaattaagcaatttaactgtttt-atggtaaaattgggaa 23968553  T
Q  101 atttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttataatgttgcatttgatgattaatatgatttcctactctgtattgatgatgt 200  Q
    ||| ||||||||||     |||||||||||| ||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  23968554 att-agggttaatggcatttttgaagaaaatatgtaagacttaggtttataatgttgtatttgatgattaatatgatttcctactctgtattgttgatgt 23968652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 20007937 - 20008138
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttg-aaaagtaatcaatttaactgtttttaaggtaaaattggaa 99  Q
    ||||||||||||||||||||||| ||| ||||||||||||| ||||||||| |||| || |||| ||||||||| ||||||| ||||||||||||||| |    
T  20007937 tttgcaattctaaggtaagggtgggatcatctttcaatagtcataatatataatttatgaaaaattaatcaattgaactgttcttaaggtaaaattggga 20008036  T
Q  100 aatttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggtttataatgttgca-tttgatgattaatatgatttcctactctgtattgatga 197  Q
    ||||||||||||| ||||| |||| ||||||| || |||| |||||||||||| ||||| | ||||||| ||| |||| |||| || ||| ||||| |||    
T  20008037 aatttagggttaaggatgattttgaaagaaaaggtataaggatcaggtttatattgttgtactttgatgtttagtatgttttcttaatctatattgttga 20008136  T
Q  198 tg 199  Q
    ||    
T  20008137 tg 20008138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 31252487 - 31252419
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatc 69  Q
    |||||||||||||||||||||||||||||||||| |||  ||||||||||| |||| |||||| |||||    
T  31252487 tttgcaattctaaggtaagggtgagattatcttttaatgattataatatataatttctgaaaattaatc 31252419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 15458554 - 15458492
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaa 63  Q
    ||||||||||||||||||||||| ||||||||||||||  ||||||||||| |||| ||||||    
T  15458554 tttgcaattctaaggtaagggtgggattatctttcaatgattataatatataatttctgaaaa 15458492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 15465149 - 15465087
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaa 63  Q
    ||||||||||||||||||||||| ||||||||||||||  ||||||||||| |||| ||||||    
T  15465149 tttgcaattctaaggtaagggtgggattatctttcaatgattataatatataatttctgaaaa 15465087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 10986173 - 10986226
Alignment:
Q  3 tgcaattctaaggtaagggtgagattatctttcaatagttataatatatgattt 56  Q
    |||||||||||||||||||||||| |||||||||||| | ||||| ||| ||||    
T  10986173 tgcaattctaaggtaagggtgagactatctttcaataatcataatctataattt 10986226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 11288662 - 11288721
Alignment:
Q  4 gcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaa 63  Q
    |||||||||||||||||||| ||||||||||||||  |  |||||||| |||| ||||||    
T  11288662 gcaattctaaggtaagggtgggattatctttcaatgatcttaatatataatttctgaaaa 11288721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 183
Target Start/End: Complemental strand, 29097789 - 29097747
Alignment:
Q  141 tcaggtttataatgttgcatttgatgattaatatgatttccta 183  Q
    ||||||||||| ||||| |||||||||||| ||||||||||||    
T  29097789 tcaggtttatactgttgtatttgatgattagtatgatttccta 29097747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28288500 - 28288537
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaat 38  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  28288500 tttgcaattctaaggtaagggtgagactatctctcaat 28288537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 19235059 - 19235257
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagt-aatcaatttaactgtttttaaggtaaaattggaa 99  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| | |||||||||||||||| ||||||||||||||| |    
T  19235059 tttgcaattctaaggtaagggtgggattatctttcaatagttataatatatgatttctgaaaaattaatcaatttaactgttcttaaggtaaaattggga 19235158  T
Q  100 aatttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttataatgttgcatttgatgattaatatgatttcctactctgtattgatgat 198  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||| ||||| ||||    
T  19235159 aatttagggttaatgatgattctgaagaaaatgtgtaagaatcaggtttataatgttgtatttgatgattagtatgatttcctaatctatattgttgat 19235257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 12033435 - 12033616
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaa 100  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||| ||||||||| ||||||| ||||||||||||||| ||    
T  12033435 tttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatcaattgaactgttcttaaggtaaaattgggaa 12033534  T
Q  101 atttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggtttataatgttgca-tttgatgattaatatgatttc 180  Q
    ||| |||||||||||||| |||| ||||||| || ||||||||||||||||||||||| | ||||||| ||| |||||||||    
T  12033535 attaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttgtactttgatgtttagtatgatttc 12033616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 17131796 - 17131615
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaa 100  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||| ||||||||| ||||||| ||||||||||||||| ||    
T  17131796 tttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatcaattgaactgttcttaaggtaaaattgggaa 17131697  T
Q  101 atttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggtttataatgttgca-tttgatgattaatatgatttc 180  Q
    |||||||||||| ||||| |||| ||||||| || |||| |||||||||||||||||| | ||||||| ||| |||||||||    
T  17131696 atttagggttaaggatgattttgaaagaaaaggtataaggatcaggtttataatgttgtactttgatgtttagtatgatttc 17131615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 14865910 - 14865729
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaa 100  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||| | |||| |||||| ||||||||| ||||||| ||||||||||||||| ||    
T  14865910 tttgcaattctaaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatcaattaaactgttcttaaggtaaaattgggaa 14865811  T
Q  101 atttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggtttataatgttgca-tttgatgattaatatgatttc 180  Q
    | | | |||||||||||| |||| ||||||| ||||||||| |||||||||||||||| | || |||||||| |||||||||    
T  14865810 aataatggttaatgatgattttgaaagaaaaggtgtaagaagcaggtttataatgttgtacttggatgattagtatgatttc 14865729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 13312891 - 13312957
Alignment:
Q  5 caattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaa 71  Q
    ||||||||||||||||||||||||||||||||||| | ||||||| | ||||||||||| |||||||    
T  13312891 caattctaaggtaagggtgagattatctttcaataatcataatatgtaatttttgaaaattaatcaa 13312957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 10389434 - 10389502
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatc 69  Q
    ||||||||||||||||||||||| ||||||||||||||  ||||||| ||| |||| ||||||||||||    
T  10389434 tttgcaattctaaggtaagggtgggattatctttcaatgattataatgtataatttctgaaaagtaatc 10389502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 10414523 - 10414591
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatc 69  Q
    ||||||||||||||||||||||| ||||||||||||||  ||||||| ||| |||| ||||||||||||    
T  10414523 tttgcaattctaaggtaagggtgggattatctttcaatgattataatgtataatttctgaaaagtaatc 10414591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 10421193 - 10421261
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatc 69  Q
    ||||||||||||||||||||||| ||||||||||||||  ||||||| ||| |||| ||||||||||||    
T  10421193 tttgcaattctaaggtaagggtgggattatctttcaatgattataatgtataatttctgaaaagtaatc 10421261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 13323782 - 13323896
Alignment:
Q  5 caattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaattta-actgtt-tttaaggtaaaattggaaaat 102  Q
    ||||||||||||||||||||||||||||||||||| | ||||||| | |||| |||||| ||||||| ||| | |||| || ||| |||||||||  |||    
T  13323782 caattctaaggtaagggtgagattatctttcaataatcataatatgtaatttctgaaaattaatcaaattagattgttcttgaagataaaattgg-gaat 13323880  T
Q  103 ttagggttaatgatga 118  Q
    |||||||| |||||||    
T  13323881 ttagggttgatgatga 13323896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 13302235 - 13302301
Alignment:
Q  5 caattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaa 71  Q
    ||||||||||||||||||||||||||||||||||| | ||||||| | |||| |||||| |||||||    
T  13302235 caattctaaggtaagggtgagattatctttcaataatcataatatgtaatttctgaaaattaatcaa 13302301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 51301650 - 51301581
Alignment:
Q  4 gcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatt 73  Q
    |||||||||||||||||||||||||||||| ||||| | ||||||| | |||| |||||| |||||||||    
T  51301650 gcaattctaaggtaagggtgagattatcttccaataatcataatatgtaatttctgaaaattaatcaatt 51301581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 24933823 - 24933880
Alignment:
Q  5 caattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaa 62  Q
    |||||||||||||||||||||| ||||| |||||| | ||||| ||| |||| |||||    
T  24933823 caattctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaa 24933880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 91193 - 91394
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggtaaaa---ttgg 97  Q
    ||||||||||||||||||||||| ||| ||||||||||| | |||||||||||||| |||||| ||| ||||||||||||||||| |||||||   ||||    
T  91193 tttgcaattctaaggtaagggtgggatcatctttcaataatgataatatatgatttctgaaaattaagcaatttaactgtttttatggtaaaaaaattgg 91292  T
Q  98 aaaatttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttataatgttgcatttgatgattaatatgatttcctactctgtattgatga 197  Q
     ||||| ||||||||||   | |||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  91293 gaaatt-agggttaatggcaattttgaagaaaatgtgtaagatttaggtttataatgttgtatttgatgattaatatgatttcctactctgtattggtga 91391  T
Q  198 tgt 200  Q
    |||    
T  91392 tgt 91394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 96919 - 97120
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggtaaaa---ttgg 97  Q
    ||||||||||||||||||||||| ||| ||||||||||| | |||||||||||||| |||||| ||| ||||||||||||||||| |||||||   ||||    
T  96919 tttgcaattctaaggtaagggtgggatcatctttcaataatgataatatatgatttctgaaaattaagcaatttaactgtttttatggtaaaaaaattgg 97018  T
Q  98 aaaatttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttataatgttgcatttgatgattaatatgatttcctactctgtattgatga 197  Q
     ||||| ||||||||||   | |||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  97019 gaaatt-agggttaatggcaattttgaagaaaatgtgtaagatttaggtttataatgttgtatttgatgattaatatgatttcctactctgtattggtga 97117  T
Q  198 tgt 200  Q
    |||    
T  97118 tgt 97120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 5 - 193
Target Start/End: Original strand, 16059 - 16247
Alignment:
Q  5 caattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagt-aatcaatttaactgtttttaaggtaaaa-ttggaaaat 102  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||| ||||| ||||||  |    
T  16059 caattctaaggtaagggtgggattatctttcaatagttataatatatgatttctgaaaaattaatcaatttaactgtttttaagataaaaattggaa--t 16156  T
Q  103 ttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttataatgttgcatttgatgattaatatgatttcctactctgtattg 193  Q
    |||||||||||||||| ||||||||||||||| |||||||||||| || |||||| |||||||||||| |||||||| ||| ||| |||||    
T  16157 ttagggttaatgatgattttgaagaaaatgtgcaagaatcaggttcatgatgttgtatttgatgattagtatgattttctaatctatattg 16247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 5e-55; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 2465425 - 2465226
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggtaaaa-ttggaa 99  Q
    ||||||||||||||||||||||| ||| ||| ||||||| | |||||||||||||| |||||| ||| ||||||||||||||||| ||||||| |||| |    
T  2465425 tttgcaattctaaggtaagggtgggatcatccttcaataatgataatatatgatttctgaaaattaagcaatttaactgtttttatggtaaaaattggga 2465326  T
Q  100 aatttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttataatgttgcatttgatgattaatatgatttcctactctgtattgatgatg 199  Q
    |||| ||||||||||   | |||||||||||||||||||| | ||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||    
T  2465325 aatt-agggttaatggcaattttgaagaaaatgtgtaagatttaggtttataatgttatatttgatgattaatatgatttcctactctgtattgttgatg 2465227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 2 - 200
Target Start/End: Original strand, 3857357 - 3857556
Alignment:
Q  2 ttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggtaaaa---ttgga 98  Q
    |||||||||||||||||||||| ||| ||||| ||||| | |||||||||||||| |||||| ||| ||||||||||||||||| |||||||   ||||     
T  3857357 ttgcaattctaaggtaagggtgggatcatctt-caataatgataatatatgatttctgaaaattaagcaatttaactgtttttatggtaaaaaaattggg 3857455  T
Q  99 aaatttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttataatgttgcatttgatgattaatatgatttcctactctgtattgatgat 198  Q
    ||||| ||||||||||   | |||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  3857456 aaatt-agggttaatggcaattttgaagaaaatgtgtaagatttaggtttataatgttgtatttgatgattaatatgatttcctactctgtattgttgat 3857554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 16091139 - 16090958
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaa 100  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||| | |||| |||||  ||||||||| |||||||  |||||||||||||| ||    
T  16091139 tttgcaattctaaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaagttaatcaattaaactgttcctaaggtaaaattgggaa 16091040  T
Q  101 atttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggtttataatgttgcatttg-atgattaatatgatttc 180  Q
    | | |||||||||||||| |||| ||||||| |||||||||||||||||||||||||| ||||| ||||||| |||||||||    
T  16091039 aataagggttaatgatgattttgaaagaaaaggtgtaagaatcaggtttataatgttgtatttgaatgattagtatgatttc 16090958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 29181100 - 29181281
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaa 100  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||| | |||| |||||| ||||||||| |||| || ||||||||||||| | ||    
T  29181100 tttgcaattctaaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatcaattaaactattcttaaggtaaaatttggaa 29181199  T
Q  101 atttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggtttataatgttgcatttg-atgattaatatgatttc 180  Q
    | | |||||||||||||| |||| ||||||| |||||||||||||| ||||||||||| ||||| ||||||| |||||||||    
T  29181200 aataagggttaatgatgattttgaaagaaaaggtgtaagaatcaggcttataatgttgtatttgaatgattagtatgatttc 29181281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 2 - 180
Target Start/End: Original strand, 20906453 - 20906632
Alignment:
Q  2 ttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaaa 101  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||| ||||||||| |||| || |||||||||||||||  ||    
T  20906453 ttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatcaattgaactattcttaaggtaaaattgg-gaa 20906551  T
Q  102 tttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggtttataatgttgca-tttgatgattaatatgatttc 180  Q
    || |||||||||||||| |||| ||||||| || ||||||||| ||||||||||||| | ||||||| ||| |||||||||    
T  20906552 ttaagggttaatgatgattttgaaagaaaaggtataagaatcaagtttataatgttgtactttgatgtttagtatgatttc 20906632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 2971318 - 2971222
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattgg 97  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||| ||| |||| |||||| ||||||||| ||||||| |||||||||||||||    
T  2971318 tttgcaattctaaggtaagggtgggattatctttcaatagtcataatttataatttctgaaaattaatcaattgaactgttcttaaggtaaaattgg 2971222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 31155458 - 31155396
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaa 63  Q
    ||||||||||||||||||||||| ||||||||||||||  ||||||||||| |||| ||||||    
T  31155458 tttgcaattctaaggtaagggtgggattatctttcaatgattataatatataatttctgaaaa 31155396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 14319620 - 14319688
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatc 69  Q
    ||||||||||||||||||||||| ||||||||||||||  || |||| ||| |||| |||||| |||||    
T  14319620 tttgcaattctaaggtaagggtgggattatctttcaatgattttaatgtataatttctgaaaattaatc 14319688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 2966925 - 2966848
Alignment:
Q  105 agggttaatgatgaatttgaa-gaaaatgtgtaagaatcaggtttataatgttgca-tttgatgattaatatgatttc 180  Q
    |||||||||||||  |||||| ||||| || |||||||||||||| |||||||| | ||||||||||| |||||||||    
T  2966925 agggttaatgatgtttttgaaagaaaaggtataagaatcaggtttttaatgttgtactttgatgattagtatgatttc 2966848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 14230845 - 14230808
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaat 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  14230845 tttgcaattctaaggtaagggtgggattatctttcaat 14230808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 11382871 - 11382923
Alignment:
Q  11 taaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaa 63  Q
    |||||||||||||||| ||||| |||||| | ||||||||| |||| ||||||    
T  11382871 taaggtaagggtgagactatctctcaataatcataatatataatttctgaaaa 11382923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 11389348 - 11389400
Alignment:
Q  11 taaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaa 63  Q
    |||||||||||||||| ||||| |||||| | ||||||||| |||| ||||||    
T  11389348 taaggtaagggtgagactatctctcaataatcataatatataatttctgaaaa 11389400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 13679548 - 13679496
Alignment:
Q  11 taaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaa 63  Q
    |||||||||||||||| |||||||||||  | || |||||| |||||||||||    
T  13679548 taaggtaagggtgagactatctttcaatgatcatgatatataatttttgaaaa 13679496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 21230952 - 21231012
Alignment:
Q  3 tgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaa 63  Q
    ||||| |||||||||||||||||| ||||| |||||| | ||| ||||| |||| ||||||    
T  21230952 tgcaaatctaaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaa 21231012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 79481 - 79662
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaa 100  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||| | |||| |||||| ||||||||| ||||||| ||||||||||||||| ||    
T  79481 tttgcaattctaaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatcaattaaactgttcttaaggtaaaattgggaa 79580  T
Q  101 atttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggtttataatgttgcatttg-atgattaatatgatttc 180  Q
    | | |||||||||||||| |||| ||||||| |||||||||||||||||||||||||| ||||| ||||||| |||||||||    
T  79581 aataagggttaatgatgattttgaaagaaaaggtgtaagaatcaggtttataatgttgtatttgaatgattagtatgatttc 79662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 16146821 - 16147002
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaa 100  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||| | |||| |||||| ||||||||| ||||||| ||||||||||||| | ||    
T  16146821 tttgcaattctaaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatcaattaaactgttcttaaggtaaaatttggaa 16146920  T
Q  101 atttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggtttataatgttgcatttg-atgattaatatgatttc 180  Q
    | | |||||||||||||| |||| ||||||| |||||||||||||||||||||||||| ||||| ||||||| |||||||||    
T  16146921 aataagggttaatgatgattttgaaagaaaaggtgtaagaatcaggtttataatgttgtatttgaatgattagtatgatttc 16147002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 27906328 - 27906263
Alignment:
Q  3 tgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaat 68  Q
    |||||||||||| |||||||| ||||||||||||||  | ||||| ||| |||| |||||| ||||    
T  27906328 tgcaattctaagataagggtgggattatctttcaatgatcataatgtataatttctgaaaattaat 27906263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1469 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold1469
Description:

Target: scaffold1469; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 1419 - 1227
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaa 100  Q
    ||||||||||||||||||||||| ||||  |||||||||||  ||||||||| ||| |||||| ||| ||||||||||||| ||||||||||||||| ||    
T  1419 tttgcaattctaaggtaagggtgggatttcctttcaatagtgttaatatatgctttctgaaaattaaacaatttaactgttcttaaggtaaaattgggaa 1320  T
Q  101 atttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttataatgttgcatttgatgattaatatgatttcctactctgtattg 193  Q
    | |||||  ||||||||| ||||||||||||| |||||| ||||||||| ||||||  | |||||||||| |||||||||||| |||||||||    
T  1319 aattaggtctaatgatgattttgaagaaaatgcgtaagattcaggtttacaatgttataattgatgattagtatgatttcctaatctgtattg 1227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 20851123 - 20851304
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaa 100  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||| ||||||||| ||||||| ||||||||||||||| ||    
T  20851123 tttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatcaattgaactgttcttaaggtaaaattgggaa 20851222  T
Q  101 atttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggtttataatgttgca-tttgatgattaatatgatttc 180  Q
    |||||||||||| ||||| |||| ||||||| || |||| |||||||||||| ||||| | ||||||| ||| |||||||||    
T  20851223 atttagggttaaggatgattttgaaagaaaaggtataaggatcaggtttatattgttgtactttgatgtttagtatgatttc 20851304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 21710882 - 21710704
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaa 100  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||| ||||||||| ||||||| ||||||||||||||| ||    
T  21710882 tttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatcaattgaactgttcttaaggtaaaattgggaa 21710783  T
Q  101 atttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggtttataatgttgcatttgatgattaatatgatt 178  Q
    |||||||||| | ||||| |||| ||||||| || |||| |||||||||||||||||  | |||||| ||| |||||||    
T  21710782 atttagggtttaagatgattttgaaagaaaaagtataaggatcaggtttataatgttatacttgatgtttagtatgatt 21710704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 20857750 - 20857907
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaa 100  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||| ||||||||| ||||||| ||||||||||||||| ||    
T  20857750 tttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatcaattgaactgttcttaaggtaaaattgggaa 20857849  T
Q  101 atttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggtttataatgttg 157  Q
    |||||||||||| ||||| |||| ||||||| || |||| |||||||||||| |||||    
T  20857850 atttagggttaaggatgattttgaaagaaaaggtataaggatcaggtttatattgttg 20857907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 21706340 - 21706183
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaa 100  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||| ||||||||| ||||||| ||||||||||||||| ||    
T  21706340 tttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatcaattgaactgttcttaaggtaaaattgggaa 21706241  T
Q  101 atttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggtttataatgttg 157  Q
    |||||||||||| ||||| |||| ||||||| || |||| |||||||||||| |||||    
T  21706240 atttagggttaaggatgattttgaaagaaaaggtataaggatcaggtttatattgttg 21706183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 94; Significance: 4e-46; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 1061 - 892
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaa 100  Q
    ||||||||||||||||||||||| ||| |||| |||||||| |||||||||||||| |||||| ||| ||||||||||||| ||| ||||||||||| ||    
T  1061 tttgcaattctaaggtaagggtgggatcatctctcaatagtgataatatatgatttctgaaaattaagcaatttaactgttcttatggtaaaattgggaa 962  T
Q  101 atttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttataatgttgcatttgatgatta 170  Q
    | ||||||||||||  || |||||||||||||||||||| | |||||||||| ||||  |||||||||||    
T  961 aattagggttaatggcgattttgaagaaaatgtgtaagatttaggtttataaagttgtgtttgatgatta 892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 4e-46; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 24320661 - 24320842
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaa 100  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||| ||||||||| ||||||| ||||||||||||||| ||    
T  24320661 tttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatcaattgaactgttcttaaggtaaaattgggaa 24320760  T
Q  101 atttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggtttataatgttgca-tttgatgattaatatgatttc 180  Q
    |||||||||||| ||||| |||| ||||||| || || | |||||||||||| ||||| | ||||||| ||| |||||||||    
T  24320761 atttagggttaaggatgattttgaaagaaaaggtatagggatcaggtttatattgttgtactttgatgtttagtatgatttc 24320842  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 29643386 - 29643446
Alignment:
Q  11 taaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaa 71  Q
    ||||||||||||||||||||||||||||| | ||||||| | |||| |||||| |||||||    
T  29643386 taaggtaagggtgagattatctttcaataatcataatatgtaatttctgaaaattaatcaa 29643446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 44477683 - 44477625
Alignment:
Q  5 caattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaa 63  Q
    |||||||||||||||||||||| ||||| |||||| | ||||| ||| |||| ||||||    
T  44477683 caattctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 44477625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 44492841 - 44492783
Alignment:
Q  5 caattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaa 63  Q
    |||||||||||||||||||||| ||||| |||||| | ||||| ||| |||| ||||||    
T  44492841 caattctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 44492783  T

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Target: scaffold0072 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 49961 - 50143
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggt-aaaattggaa 99  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||| | |||| | |||| ||||||||| ||||||| ||||||| |||||||| |    
T  49961 tttgcaattctaaggtaagggtgggattatctttcaatagtcataatatgtaatttctaaaaattaatcaattaaactgttcttaaggtaaaaattggga 50060  T
Q  100 aatttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggtttataatgttgcatttg-atgattaatatgatttc 180  Q
    || | |||||||||||||| |||| ||||||| |||||||||||||||||||||||||  ||||| | ||||| |||||||||    
T  50061 aaataagggttaatgatgattttgaaagaaaaggtgtaagaatcaggtttataatgttatatttgaaagattagtatgatttc 50143  T

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Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 25180920 - 25181101
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaa 100  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||| ||||||||| ||||||| ||||||||||||||| ||    
T  25180920 tttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatcaattgaactgttcttaaggtaaaattgggaa 25181019  T
Q  101 atttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggtttataatgttgca-tttgatgattaatatgatttc 180  Q
    |||||||||||| ||||| |||| ||||||| || ||   |||||||||||| | ||| | ||||||| ||| |||||||||    
T  25181020 atttagggttaaggatgattttgaaagaaaaggtatattgatcaggtttatatttttgtactttgatgtttagtatgatttc 25181101  T

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Target: chr2; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 10641 - 10460
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaa 100  Q
    |||| |||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||| ||||||||| || |||| ||||||||||||||| ||    
T  10641 tttgaaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatcaattgaattgttcttaaggtaaaattgggaa 10542  T
Q  101 atttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggtttataatgttgca-tttgatgattaatatgatttc 180  Q
    |||||||||||| ||||| |||| ||||||| || || | || ||||||||| ||||| | ||||||| ||| |||||||||    
T  10541 atttagggttaaggatgattttgaaagaaaaggtatagggataaggtttatattgttgtactttgatgtttagtatgatttc 10460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 27207710 - 27207778
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatc 69  Q
    ||||||||||||||||||||||| ||||||||||||||  || |||| ||| |||| |||||| |||||    
T  27207710 tttgcaattctaaggtaagggtgggattatctttcaatgattttaatgtataatttctgaaaattaatc 27207778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 26885244 - 26885208
Alignment:
Q  3 tgcaattctaaggtaagggtgagattatctttcaata 39  Q
    ||||||||||||||||||||| |||||||||||||||    
T  26885244 tgcaattctaaggtaagggtgggattatctttcaata 26885208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 23168291 - 23168324
Alignment:
Q  3 tgcaattctaaggtaagggtgagattatctttca 36  Q
    ||||||||||||||||||||| ||||||||||||    
T  23168291 tgcaattctaaggtaagggtgggattatctttca 23168324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 23579548 - 23579581
Alignment:
Q  3 tgcaattctaaggtaagggtgagattatctttca 36  Q
    ||||||||||||||||||||| ||||||||||||    
T  23579548 tgcaattctaaggtaagggtgggattatctttca 23579581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 135502 - 135352
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaa-ggtaaaattggaa 99  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||| |||||| ||||||||| ||||||| |||| |||||||||| |     
T  135502 tttgcaattctaaggtaagcgtgagattatctttcaatagtcataatatataatttctgaaaattaatcaattgaactgttcttaaaggtaaaattg-ag 135404  T
Q  100 aatttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggtttat 150  Q
    |||| |||||||||||||| |||| ||||||| |||||||||||||||||||    
T  135403 aattaagggttaatgatgattttgaaagaaaaggtgtaagaatcaggtttat 135352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 180
Target Start/End: Complemental strand, 9396 - 9219
Alignment:
Q  5 caattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtt-tttaaggtaaaattggaaaatt 103  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||| ||||||||| ||||||| || || ||||||||||  ||||    
T  9396 caattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatcaattgaactgttcttaaaagtaaaattgg-gaatt 9298  T
Q  104 tagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggtttataatgttg-catttgatgattaatatgatttc 180  Q
     |||||||||||||| |||| ||||||| |||||||||| ||||||||  |||||  |||||||| ||| |||||||||    
T  9297 aagggttaatgatgattttgaaagaaaaggtgtaagaattaggtttattgtgttgtaatttgatgtttagtatgatttc 9219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1318 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 1903 - 2053
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtt-tttaaggtaaaattggaa 99  Q
    ||||||||| ||||||||||||| ||||||||||||||||| ||||||||| |||| |||||| ||||||||| ||||||| || || ||||||||||      
T  1903 tttgcaattgtaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatcaattgaactgttcttgaaagtaaaattgg-g 2001  T
Q  100 aatttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggtttat 150  Q
    |||| |||||||||||||| |||| ||||||| |||||||||| ||||||||    
T  2002 aattaagggttaatgatgattttgaaagaaaaggtgtaagaattaggtttat 2053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 68 - 6
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaa 63  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||    
T  68 tttgcaattctaaggtaagggtgggattatctttcaatagttctaatatatgatttctgaaaa 6  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0099 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0099
Description:

Target: scaffold0099; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 12 - 183
Target Start/End: Complemental strand, 13019 - 12836
Alignment:
Q  12 aaggtaagggtgagattatcttt-caatagttataatatatgatttttgaaaagt-aatcaa---tttaactgtttttaa-ggtaaaatt--ggaaaatt 103  Q
    |||||||||||| |||||||||| |||||||| ||||||||||||| | |||| | |||| |   |||||||||| |||| ||||||| |  || |||||    
T  13019 aaggtaagggtgggattatctttacaatagttctaatatatgatttctaaaaaattaatctaaattttaactgttcttaaaggtaaaaattggggaaatt 12920  T
Q  104 tagggttaatg-atgaatttgaagaaaatgtgt-aagaatc-aggtttataatgttgcatttg-atgattaatatgatttccta 183  Q
    ||||||||||| |||| | ||||| |||||||| ||||||| ||||||||||||||| ||||| ||||||| ||||||||||||    
T  12919 tagggttaatgtatgattctgaaggaaatgtgttaagaatctaggtttataatgttgtatttgtatgattagtatgatttccta 12836  T

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Target: scaffold0609 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 5848 - 5916
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatc 69  Q
    ||||||||||||||||||||||| ||||||||||||||  ||||||||||| |||| |||||| |||||    
T  5848 tttgcaattctaaggtaagggtgggattatctttcaatgattataatatataatttctgaaaattaatc 5916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 13885 - 13947
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaa 63  Q
    ||||||||||||||||||||||| ||||||||||||||  ||||||||||| |||| ||||||    
T  13885 tttgcaattctaaggtaagggtgggattatctttcaatgattataatatataatttctgaaaa 13947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 10299 - 10231
Alignment:
Q  5 caattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatt 73  Q
    ||||||||||||||||||||||||||||| ||||| | ||||||| | |||| |||||| |||||||||    
T  10299 caattctaaggtaagggtgagattatcttccaataatcataatatgtaatttctgaaaattaatcaatt 10231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 3393 - 3461
Alignment:
Q  1 tttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatc 69  Q
    |||||||||||||||||||||||| |||||||||||||   | |||||||| |||| |||||| |||||    
T  3393 tttgcaattctaaggtaagggtgatattatctttcaatgaatttaatatataatttctgaaaattaatc 3461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 493021 - 493057
Alignment:
Q  3 tgcaattctaaggtaagggtgagattatctttcaata 39  Q
    |||||||||||||||||||||||||||||||||||||    
T  493021 tgcaattctaaggtaagggtgagattatctttcaata 493057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 111747 - 111688
Alignment:
Q  4 gcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaa 63  Q
    ||||||||||||||||||||||| ||||| |||||| | ||||| ||| |||| ||||||    
T  111747 gcaattctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 111688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 23562 - 23628
Alignment:
Q  3 tgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatc 69  Q
    ||||||||||||||||||||| |||||||||| |||  | ||||| ||| |||| |||||| |||||    
T  23562 tgcaattctaaggtaagggtgggattatctttgaatgatcataatgtataatttctgaaaattaatc 23628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 18225 - 18172
Alignment:
Q  10 ctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaa 63  Q
    ||||||||||||||||| ||||| |||||| | ||||| ||| |||||||||||    
T  18225 ctaaggtaagggtgagactatctctcaataatcataatctataatttttgaaaa 18172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 1441 - 1389
Alignment:
Q  11 taaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaa 63  Q
    |||||||||||||||| |||||||||||  | || |||||| |||||||||||    
T  1441 taaggtaagggtgagactatctttcaatgatcatgatatataatttttgaaaa 1389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 40524 - 40584
Alignment:
Q  3 tgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaa 63  Q
    ||||| |||||||||||||||||| ||||| |||||| | ||| ||||| |||| ||||||    
T  40524 tgcaaatctaaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaa 40584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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