View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6098_low_1 (Length: 309)
Name: NF6098_low_1
Description: NF6098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6098_low_1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 5e-99; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 4306280 - 4306527
Alignment:
| Q |
19 |
ttggagaaaaggaaggataggtaagcctgccagatctctcgctctct--atcaaatattgaaaatcttatctccaaagtattgttttatttttgtcaaaa |
116 |
Q |
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| T |
4306280 |
ttggagaaaaggaaggataggtaagcctgccagatctctctctctctctatcaaatattgaaaatcttatcttcaaagtattgtttgatttttgtcaaaa |
4306379 |
T |
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| Q |
117 |
gacttcannnnnnnnnngggaaaaactcaaatatcaagtcaataataaataaagtttaatgtaagtttggttccacttttgaagaattcaaggttgattt |
216 |
Q |
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| T |
4306380 |
gacttcattttttttttgggaaaaactcaaatatcaagtcaattataaataaagtttaatgtaagtttggttccacttttggagaattcaaggttgattt |
4306479 |
T |
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| Q |
217 |
tagaggtgtgaaattgattctgacatgttttgttcatgagttgaattg |
264 |
Q |
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| T |
4306480 |
tagaggtgtgaaattgattttgacatgttttgttcatgagttgaattg |
4306527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 4311637 - 4311669
Alignment:
| Q |
19 |
ttggagaaaaggaaggataggtaagcctgccag |
51 |
Q |
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| T |
4311637 |
ttggagaaaaggaaggataggtaagcctgccag |
4311669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 4301237 - 4301267
Alignment:
| Q |
19 |
ttggagaaaaggaaggataggtaagcctgcc |
49 |
Q |
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| T |
4301237 |
ttggagaaaaggaaggataggtaagcctgcc |
4301267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 262 - 309
Target Start/End: Original strand, 5338747 - 5338794
Alignment:
| Q |
262 |
ttgtataattgtgaaaaatttaaaacacgtaccgaattacccttgtct |
309 |
Q |
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| T |
5338747 |
ttgtataattgtgaaaaatttaaaacacgtaccgaattacccttgtct |
5338794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 245
Target Start/End: Complemental strand, 29240644 - 29240575
Alignment:
| Q |
176 |
tgtaagtttggttccacttttgaagaattcaaggttgattttagaggtgtgaaattgattctgacatgtt |
245 |
Q |
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| T |
29240644 |
tgtatgtttggttccacttttgggggaatcaaaattgattctagaggtgtaaaattgattttgacatgtt |
29240575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 39438686 - 39438751
Alignment:
| Q |
181 |
gtttggttccacttttgaagaattcaaggttgattttagaggtgtgaaattgattctgacatgttt |
246 |
Q |
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| T |
39438686 |
gtttggttccacgtttggagtagtcaaaattgattttggaggtgtaaaattgattttgacatgttt |
39438751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 7629750 - 7629830
Alignment:
| Q |
171 |
tttaatgtaagtttggttccacttttgaagaattcaaggttgattttagaggtgtgaaattgattctgacatgttttgttc |
251 |
Q |
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| T |
7629750 |
tttagtgtatgtttggttccacttttggaggagccaagattgattctagaggtgtagaattgattttgtcatgtttggttc |
7629830 |
T |
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