View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6098_low_3 (Length: 242)
Name: NF6098_low_3
Description: NF6098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6098_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 3224949 - 3225185
Alignment:
| Q |
1 |
ttacatcattatgttttgtcatgtgacaatttgagattgtgataccagtagaaccttggataacatcaacaagaccatcctcacattcagagagtgaaag |
100 |
Q |
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| T |
3224949 |
ttacatcattatgttttgtcatgtgacaatttgagattgtgataccagtagaaccttggataatatcaacaagaccatcctcacattcagagagtgaaag |
3225048 |
T |
|
| Q |
101 |
atgatcaatccaaatattggaagatccataaatagagatagcatcaccatcacttcttgttctttgtccagtatggtcaaaagaatccctaatcaaacca |
200 |
Q |
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| T |
3225049 |
atgatcaatccaaatattggaagatccataaatagagatagcatcaccatcacttcttgttctttgtccagtatggtcaaaagaatccctaatcaaacca |
3225148 |
T |
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| Q |
201 |
cctggtttagctttaatatcttgaagatgatgtccat |
237 |
Q |
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| T |
3225149 |
cctggtttagctttaatattttgaatatgaagtccat |
3225185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 2045519 - 2045318
Alignment:
| Q |
1 |
ttacatcattatgttttgtcatgtgacaatttgagattgtgataccagtagaaccttggataacatcaacaagaccatcctcacattcagagagtgaaag |
100 |
Q |
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||||||| |||||||| |||||||| ||||||||||| |||| ||||||| ||||| || |||||||||||||||||||| || | ||| | |||| |
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| T |
2045519 |
ttacatcgttatgtttggtcatgtggcaatttgagatggtgactgcagtagagccttgaatgacatcaacaagaccatcctcgcaattagataaggaaat |
2045420 |
T |
|
| Q |
101 |
atgatcaatccaaatattggaagatccataaatagagatagcatcaccatcacttcttgttctttgtccagtatggtcaaaagaatccctaatcaaacca |
200 |
Q |
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|||||||||||| || || || || ||| | | ||||||||||||||||||||| ||||||||| ||| ||| || ||||| || |||||||||||| |
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| T |
2045419 |
atgatcaatccagatgtttgatgaaccaaagacagagatagcatcaccatcactccttgttcttactccgagatgatcgaaagagtctctaatcaaacca |
2045320 |
T |
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| Q |
201 |
cc |
202 |
Q |
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|| |
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| T |
2045319 |
cc |
2045318 |
T |
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