View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6099_high_15 (Length: 307)
Name: NF6099_high_15
Description: NF6099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6099_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 28476122 - 28475841
Alignment:
| Q |
1 |
aaaaccacagtgagattaatatgacaccattttcattgattattacacacatttattttcttatggaagatgaaaatccttacccttaaaggcttgagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28476122 |
aaaaccacagtgagattaatatgacaccattttcattgattattacactcatttattttcttatggaagatgaaaatccttacccttaaaggcttgagaa |
28476023 |
T |
|
| Q |
101 |
agaatcatgtaatattcagttgtatgttgattgaaacatgaaagtttcctttgtttgnnnnnnnggttatgtatttagattcatgacatgttgaatcttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
28476022 |
agaatcatgtaatattcagttgtatgttgattgaaacatgaaagtttcctttgtttgtttttttggttatgtatttagattcatgacatgttgaatcttt |
28475923 |
T |
|
| Q |
201 |
agtgtatattgtacaaaatagaggagttgtggcctccaaactcgtaaatagagccttaatgtgtgtgcctctatcaatcgga |
282 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
28475922 |
agtgtatatagtacaaaatagaggagttgtggcctccaaactcgtaaatagagccttaatgtgtgtgcctctttcaatcgga |
28475841 |
T |
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