View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6099_high_16 (Length: 296)
Name: NF6099_high_16
Description: NF6099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6099_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 40392397 - 40392118
Alignment:
| Q |
1 |
ctgcataacaatgataaaaactcaagcaagtaataacaataccaatgaagcgatataactctagatgattcaagtcatatgctgaaaaagttatgtagaa |
100 |
Q |
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| T |
40392397 |
ctgcataacaatgctaaaaactcaaacaagtaataacaatgccaatgattcgatataactctagatgattcaagtcatatgctgaaaaagttatgtagaa |
40392298 |
T |
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| Q |
101 |
aatcctgcttactagcaatacaccatcattgctcnnnnnnnn-gtatgaagtgatcgagatcgacattagacgctgccattgaacaaagacaacaatgta |
199 |
Q |
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| T |
40392297 |
aatcctgcttactagcaatacacaatcattgctctttttttttgtatgaagtgatcgagatcgacattagactctgccattgaacaaagacaacaatgta |
40392198 |
T |
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| Q |
200 |
gatgcaaataaattaaaatatcttttgtgcttaataagcagaactagtaagcatcattatcccttagttcatgttaatca |
279 |
Q |
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| T |
40392197 |
gatgcaaataaattaaaatatcttttgtgcttaataagcagaactagtaagcatcattatcccttaattcatgttaatca |
40392118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 76 - 200
Target Start/End: Complemental strand, 40380939 - 40380818
Alignment:
| Q |
76 |
catatgctgaaaaagttatgtagaaaatcctgcttactagcaatacaccatcattgctcnnnnnnnngtatgaagtgatcgagatcgacattagacgctg |
175 |
Q |
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| T |
40380939 |
catatgctgaaaaagttatttagaaaatccttcttgctagcaatacaccatcattgttctttttttcgtatgaag----cgagatcgacattagaatctg |
40380844 |
T |
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| Q |
176 |
cc-attgaacaaagacaacaatgtag |
200 |
Q |
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|| | ||||||||||||||||||||| |
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| T |
40380843 |
ccaaatgaacaaagacaacaatgtag |
40380818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 213
Target Start/End: Original strand, 41052100 - 41052133
Alignment:
| Q |
180 |
tgaacaaagacaacaatgtagatgcaaataaatt |
213 |
Q |
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|||||||||||||||||||| ||||||||||||| |
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| T |
41052100 |
tgaacaaagacaacaatgtatatgcaaataaatt |
41052133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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