View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6099_high_18 (Length: 280)
Name: NF6099_high_18
Description: NF6099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6099_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 6732685 - 6732974
Alignment:
| Q |
1 |
taaacagtatagagacatggataaacatatataagtcacatactatgatgttagaaaagaacacaatgatcgttttttctagtctttgaactgtgttgtg |
100 |
Q |
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| T |
6732685 |
taaacagtatagagacatggataaacatatataagtcacgtactatgatgttagaaaagaacacaatgatcgttttttctagtctttgaactgtgttgtg |
6732784 |
T |
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| Q |
101 |
tcaaat--------------------acatctagcaaatcatcactcatttaggcgcattagcataataat----gaacctgttgttgacacttttacac |
176 |
Q |
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||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6732785 |
tcatatggaattgatcatcattttgtacatctagcaaatcatcactcatttaggcgcattagcataataattaatgaacctgttgttgacacttttacac |
6732884 |
T |
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| Q |
177 |
nnnnnnnacacttgcaaaattaactattttgac---aattaaggataatgtaccacaccttattcaaagcaaaataaaagataatgtacc |
263 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6732885 |
tttttttacacttgcaaaattaactattttgaccttaattaaggataatgtaccacaccttattcaaagcaaaataaaagataatgtacc |
6732974 |
T |
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