View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6099_high_2 (Length: 627)
Name: NF6099_high_2
Description: NF6099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6099_high_2 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 549; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 23 - 616
Target Start/End: Complemental strand, 1630541 - 1629944
Alignment:
| Q |
23 |
cactatcgcttatgtacttttatatgaatatatatagtcatattaatcaaaatatctggattcgtcacttgcagaaacagaagaagggtcatttccaaat |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1630541 |
cactatcgcttatgtacttttatatgaatatatatagtcatactaatcaaaaattttggattcgtcacttgcagaaacagaagaagggtcattttcaaat |
1630442 |
T |
|
| Q |
123 |
tggttttctgtgcatgaaaggaagcttttgcagtctaagtctccagtaaagtacaatcttgtggtggcaaaagatggttctggtcagtacaagactgtgc |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
1630441 |
tggttttctgtgcatgaaaggaagcttttgcagtctaagtctccagtaaagtacaatcttgtggtggcaaaagatggttctggacagtacaagactgtgc |
1630342 |
T |
|
| Q |
223 |
aagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttca |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1630341 |
aagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttca |
1630242 |
T |
|
| Q |
323 |
taatgacaatattatgctggttggtgatggtatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaaca |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1630241 |
taatgacaatattatgctggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaaca |
1630142 |
T |
|
| Q |
423 |
gcaggtgagttatattccatctcctttaatctctttttattttatcatttgaagttctaaatttttataataagataggtttataatatttaaattatac |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1630141 |
gcaggtgagttatattccatctcctttaatctctttttattttatcatttgaagttctaaatttttataataagataggtttataatatttaaattatac |
1630042 |
T |
|
| Q |
523 |
ttgaggctttctta----catacaattactttaattttttattttaaataattactcttggatcatttaaatttaggtattgatggacttcacttcat |
616 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1630041 |
ttgaggctttcttacatgcatacaattactttcattttttattttaaataattactcttggatcatttaaatttaggtattgatggacttcacttcat |
1629944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 19 - 447
Target Start/End: Complemental strand, 1607552 - 1607121
Alignment:
| Q |
19 |
ataacactatcgcttatgtactttt-atatgaatatatata--gtcatattaatcaaaatatctggattcgtcacttgcagaaacagaagaagggtcatt |
115 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1607552 |
ataacactatcgcttatgtactttttatatgaatatatatatagtcatactaatcaaaatttctggattcgtcacttgcagaaacagaagaagggtcatt |
1607453 |
T |
|
| Q |
116 |
tccaaattggttttctgtgcatgaaaggaagcttttgcagtctaagtctccagtaaagtacaatcttgtggtggcaaaagatggttctggtcagtacaag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
1607452 |
tccaaattggttttctgtgcatgaaaggaagcttttgcagtcaaagggtccagtaaagtacaatcttgtggtggcaaaagatggttctggacagtacaag |
1607353 |
T |
|
| Q |
216 |
actgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttg |
315 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1607352 |
actgtgcaggctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttg |
1607253 |
T |
|
| Q |
316 |
ctgttcataatgacaatattatgctggttggtgatggtatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctc |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
1607252 |
ctgttcataatgacaatattatgctggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttttaccacttatagctc |
1607153 |
T |
|
| Q |
416 |
tgcaacagcaggtgagttatattccatctcct |
447 |
Q |
| |
|
||||||||||||||| ||||||| ||| |||| |
|
|
| T |
1607152 |
tgcaacagcaggtgaattatatttcatttcct |
1607121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 51 - 447
Target Start/End: Complemental strand, 1624538 - 1624142
Alignment:
| Q |
51 |
tatatatagtcatattaatcaaaatatctggattcgtcacttgcagaaacagaagaagggtcatttccaaattggttttctgtgcatgaaaggaagcttt |
150 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1624538 |
tatatatagtcatactaatcaaaatttctggatccgtcacttgcagaaacagaagaagggtcatttccaaattggttttctgtgcatgaaaggaagcttt |
1624439 |
T |
|
| Q |
151 |
tgcagtctaagtctccagtaaagtacaatcttgtggtggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaagag |
250 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1624438 |
tgcagtcaaagggtccagtaaagtacaatcttgtggtggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaagag |
1624339 |
T |
|
| Q |
251 |
aaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtgat |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1624338 |
aaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtgat |
1624239 |
T |
|
| Q |
351 |
ggtatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacagcaggtgagttatattccatctcct |
447 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||| |||| |
|
|
| T |
1624238 |
gggatgcaaaataccataataacaagttctagaagtgttcaaggtggttttaccacttatagctctgcaacagcaggtgaattatatttcatttcct |
1624142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 19 - 445
Target Start/End: Original strand, 10819728 - 10820160
Alignment:
| Q |
19 |
ataacactatcgcttatgtactttt-atatgaatatatatagtcatattaatcaaaatatctggattcgtcacttgcagaaacagaa------gaagggt |
111 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||||||| ||||| |||| ||||||| ||||| |||||||||||||| ||||||| |
|
|
| T |
10819728 |
ataacactatcgcttatgtactttttatataaatatatatagtcatactaatctaaatttctggatccgtca-ttgcagaaacagaaatagaagaagggt |
10819826 |
T |
|
| Q |
112 |
catttccaaattggttttctgtgcatgaaaggaagcttttgcagtctaagtctccagtaaagtacaatcttgtggtggcaaaagatggttctggtcagta |
211 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10819827 |
cacttccaaattggttttctgtgcatgaaaggaagcttttgcagtctaagtctccaatgaagttcaatcttgtggtggcaaaagatggttctggacagta |
10819926 |
T |
|
| Q |
212 |
caagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgag |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
10819927 |
caagactgtgcaagctgctttaaatgctgctgctaagagaaaatacaagacaaggtatgtgatacatgtgaagaaaggtgtttataaagagaacattgag |
10820026 |
T |
|
| Q |
312 |
gttgctgttcataatgacaatattatgctggttggtgatggtatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttata |
411 |
Q |
| |
|
||||||||||||||||| || |||||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10820027 |
gttgctgttcataatgataacattatgttggtcggtgatggaatgcaaaataccatcataacaagttctagaagtgttcaaggtggttttaccacttata |
10820126 |
T |
|
| Q |
412 |
gctctgcaacagcaggtgagttatattccatctc |
445 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
10820127 |
gctctgcaacagccggtgagttatattccatctc |
10820160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 456 - 616
Target Start/End: Original strand, 10820598 - 10820754
Alignment:
| Q |
456 |
tttttattttatcatttgaagttctaaatttttataataagataggtttataatatttaaattatacttgaggctttcttacatacaattactttaattt |
555 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| || | |
|
|
| T |
10820598 |
tttttattttatattttgaagttctaaaattttatactaagataggtttataatatttaaattataattgtggctttcttacctacaattactttcatat |
10820697 |
T |
|
| Q |
556 |
tttattttaaataattactcttggatcatttaaatttaggtattgatggacttcacttcat |
616 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10820698 |
----ttttaaataattactcttggatcatttaaatttaggtattgatggacttcacttcat |
10820754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 573 - 616
Target Start/End: Complemental strand, 1606689 - 1606646
Alignment:
| Q |
573 |
ctcttggatcatttaaatttaggtattgatggacttcacttcat |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1606689 |
ctcttggatcatttaaatttaggtattgatggacttcacttcat |
1606646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 87 - 436
Target Start/End: Complemental strand, 18785528 - 18785179
Alignment:
| Q |
87 |
tcacttgcagaaacagaagaagggtcatttccaaattggttttctgtgcatgaaaggaagcttttgcagtctaagtctccagtaaagtacaatcttgtgg |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
18785528 |
tcacttgcagaaacagaagaagggtcatttccaaattggttttctatgcatgaaaggaagcttttgcagtctaagtctccagtaaagtacaatattgtgg |
18785429 |
T |
|
| Q |
187 |
tggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaa |
286 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18785428 |
tggcaaaagatggttctggacagtacaagactgtgcaagctgctctaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgtgaagaa |
18785329 |
T |
|
| Q |
287 |
aggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtgatggtatgcaaaataccataataacaagttctagaagt |
386 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||| ||||| || |||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18785328 |
aggtgtttataaagagaacattgaggttgcggttcacaatgataacattatgttggttggtgatgggatgcaaaataccataataacaagttctagaagt |
18785229 |
T |
|
| Q |
387 |
gttcaaggtggttataccacttatagctctgcaacagcaggtgagttata |
436 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18785228 |
gttcaaggtggttttaccacttatagctctgcaacagcaggtgaattata |
18785179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 222 - 428
Target Start/End: Complemental strand, 12803590 - 12803384
Alignment:
| Q |
222 |
caagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttc |
321 |
Q |
| |
|
|||| |||| |||||||||||| | ||||| | ||| ||||| ||||| |||| ||| ||||||||||||||||||||||| |||| ||||| | |
|
|
| T |
12803590 |
caagatgctataaatgctgctgggaggagaaggtttaaaacaagatttgttatacgtgtgaagaaaggtgtttatagagagaatattgtggttg-ggaag |
12803492 |
T |
|
| Q |
322 |
at-aatgacaatattatgctggttggtgatggtatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaa |
420 |
Q |
| |
|
|| ||||| ||||||||| |||| |||||||| | |||||| | ||||||||| ||||| |||||||| ||||| ||| || ||||||||||| | |
|
|
| T |
12803491 |
atgaatgataatattatgttggtaggtgatggaagtagaaatacagtgataacaagtaatagaaatgttcaagctggttttactacctatagctctgcca |
12803392 |
T |
|
| Q |
421 |
cagcaggt |
428 |
Q |
| |
|
| |||||| |
|
|
| T |
12803391 |
ctgcaggt |
12803384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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