View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6099_high_4 (Length: 544)
Name: NF6099_high_4
Description: NF6099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6099_high_4 |
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| [»] scaffold0651 (2 HSPs) |
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Alignment Details
Target: scaffold0651 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 57 - 528
Target Start/End: Complemental strand, 1730 - 1260
Alignment:
| Q |
57 |
tttgcagcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcatatgattttgatgtaaacgaatgcgagtctaaaaggagtgatgaa |
156 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1730 |
tttgtagcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcataggattttgatgtaaacgaatgcgagtctaaaaggagtgaggaa |
1631 |
T |
|
| Q |
157 |
tttatgcttgagacccctttgcacaatcttttctcttttatccaaagacaagcttgagaagttgttgataaatggccatttcttattgagacatagcaaa |
256 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1630 |
tttatgcttgagacccctttgtacaatcttttctcttttatccaaagacaagcttgagaagttgttgataaatggccatttcttactgagacatagcaaa |
1531 |
T |
|
| Q |
257 |
ccacaaatcaacaaagtgcccaatcttgttgctagaagccacagaatcaccctaatcaatattactgcttctattacagccctcttctcgaacatctcag |
356 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1530 |
ccacaaatcaacaaagtgcccaaccttgttgctagaagccacagaatcaccctaatcaatattactgcttctattacagccctcttctcgaacatctcag |
1431 |
T |
|
| Q |
357 |
caacctgttgccattcaaaatttacaacataattttcctaagatatttcactaaattattcactattttctcaaatacataattttcaaaagttcgttct |
456 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||| ||||| |
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| T |
1430 |
caacctgttgccattcaaaatttacgacataattttcctaagatatttcactaaattattcacgatttcctcaaattcataattttcaaaagtttgttct |
1331 |
T |
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| Q |
457 |
nnnnnnnnngatataatttttaattnnnnnnncaatatacaacatgttaagaaatacactaagttttatcct |
528 |
Q |
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| T |
1330 |
caaaaataagatataatttttaatt-aaaaaacaatatacaacatgtaaagaaatacactaagttttatcct |
1260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 4039 - 4409
Alignment:
| Q |
1 |
tgttatatttcaataagaagtttaattttaattattgtgagtgtacaaaatggcactttgcagcaaggttgaagaaataatatatacccaagagaagaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4039 |
tgttatatttcaataagaagtttaattttaattattgtgagtgtacaaaatggcactttgcagcaaggttgaagaaataatatatacccaagagaagaaa |
4138 |
T |
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| Q |
101 |
acaaagaggcatatgattttgatgtaaacgaatgcgagtctaaaaggagtgatgaatttatgcttgagacccctttgcacaatcttttctcttttatcca |
200 |
Q |
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|||||||| |||| || |||||||||| |||||||||||||||||||||||| ||| || |||||||| |||| ||||||||||||||||||||||||| |
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| T |
4139 |
acaaagagacataggactttgatgtaagcgaatgcgagtctaaaaggagtgaggaacctaagcttgagagccctctgcacaatcttttctcttttatcca |
4238 |
T |
|
| Q |
201 |
aagacaagcttgagaagttgttgataaatggccatttcttattgagacatagcaaaccacaaatcaacaaagtgcccaatcttgttgctagaagccacag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||| ||||||||||| || ||||| |||||||| || |
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| T |
4239 |
aagacaagcttgagaagttgttgataaatggccatttcttgctaagacagagcaaaccacaaatcaataaagtgcccaacctcgttgccagaagccatag |
4338 |
T |
|
| Q |
301 |
aatcaccctaatcaatattactgcttctattacagccctcttctcgaacatctcagcaacctgttgccatt |
371 |
Q |
| |
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||||||||| |||||||||||||||||| ||||| | |||||| | | |||||||||||||||||| |||| |
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| T |
4339 |
aatcacccttatcaatattactgcttctgttacaccgctcttcactagcatctcagcaacctgttggcatt |
4409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 57 - 528
Target Start/End: Complemental strand, 31331816 - 31331346
Alignment:
| Q |
57 |
tttgcagcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcatatgattttgatgtaaacgaatgcgagtctaaaaggagtgatgaa |
156 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31331816 |
tttgtagcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcataggattttgatgtaaacgaatgcgagtctaaaaggagtgaggaa |
31331717 |
T |
|
| Q |
157 |
tttatgcttgagacccctttgcacaatcttttctcttttatccaaagacaagcttgagaagttgttgataaatggccatttcttattgagacatagcaaa |
256 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31331716 |
tttatgcttgagacccctttgtacaatcttttctcttttatccaaagacaagcttgagaagttgttgataaatggccatttcttactgagacatagcaaa |
31331617 |
T |
|
| Q |
257 |
ccacaaatcaacaaagtgcccaatcttgttgctagaagccacagaatcaccctaatcaatattactgcttctattacagccctcttctcgaacatctcag |
356 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31331616 |
ccacaaatcaacaaagtgcccaaccttgttgctagaagccacagaatcaccctaatcaatattactgcttctattacagccctcttctcgaacatctcag |
31331517 |
T |
|
| Q |
357 |
caacctgttgccattcaaaatttacaacataattttcctaagatatttcactaaattattcactattttctcaaatacataattttcaaaagttcgttct |
456 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||| ||||| |
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| T |
31331516 |
caacctgttgccattcaaaatttacgacataattttcctaagatatttcactaaattattcacgatttcctcaaattcataattttcaaaagtttgttct |
31331417 |
T |
|
| Q |
457 |
nnnnnnnnngatataatttttaattnnnnnnncaatatacaacatgttaagaaatacactaagttttatcct |
528 |
Q |
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|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
31331416 |
caaaaataagatataatttttaatt-aaaaaacaatatacaacatgtaaagaaatacactaagttttatcct |
31331346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 31319631 - 31319261
Alignment:
| Q |
1 |
tgttatatttcaataagaagtttaattttaattattgtgagtgtacaaaatggcactttgcagcaaggttgaagaaataatatatacccaagagaagaaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31319631 |
tgttatatttcaataagaagtttaattttaattattgtgagtgtacaaaatggcactttgcagcaaggttgaagaaataatatatacccaagagaagaaa |
31319532 |
T |
|
| Q |
101 |
acaaagaggcatatgattttgatgtaaacgaatgcgagtctaaaaggagtgatgaatttatgcttgagacccctttgcacaatcttttctcttttatcca |
200 |
Q |
| |
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|||||||| |||| || |||||||||| |||||||||||||||||||||||| ||| || |||||||| |||| ||||||||||||||||||||||||| |
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| T |
31319531 |
acaaagagacataggactttgatgtaagcgaatgcgagtctaaaaggagtgaggaacctaagcttgagagccctctgcacaatcttttctcttttatcca |
31319432 |
T |
|
| Q |
201 |
aagacaagcttgagaagttgttgataaatggccatttcttattgagacatagcaaaccacaaatcaacaaagtgcccaatcttgttgctagaagccacag |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||| ||||||||||| || ||||| |||||||| || |
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| T |
31319431 |
aagacaagcttgagaagttgttgataaatggccatttcttgctaagacagagcaaaccacaaatcaataaagtgcccaacctcgttgccagaagccatag |
31319332 |
T |
|
| Q |
301 |
aatcaccctaatcaatattactgcttctattacagccctcttctcgaacatctcagcaacctgttgccatt |
371 |
Q |
| |
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||||||||| |||||||||||||||||| ||||| | |||||| | | |||||||||||||||||| |||| |
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| T |
31319331 |
aatcacccttatcaatattactgcttctgttacaccgctcttcactagcatctcagcaacctgttggcatt |
31319261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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