View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6099_high_8 (Length: 375)
Name: NF6099_high_8
Description: NF6099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6099_high_8 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 24493518 - 24493177
Alignment:
| Q |
1 |
tccaatggtggtgtggtttgtgatgaggatgtaagcgtgggtgaaggtgatggttgaatgctatttgtgtttgaaggagtgggttgggttgatggaggtg |
100 |
Q |
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| T |
24493518 |
tccaatggtggtgtggtttgtgatgaggatgtaagcgtgggtgaaggtgatggttgaatgctatttgtgtttgaaggagtgggttgggttgatggaggtg |
24493419 |
T |
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| Q |
101 |
tggttgaattatggattatggtttctgaggttctaggctgatgtgggtgggccaagatattagggagtgggagccacggatgttgggaagtgggcagtaa |
200 |
Q |
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| T |
24493418 |
tggttgaattatggattatggtttctgaggttctaggctgatgtgggtgggaaaagatattagggagtgggagccacggatgttgggaagtgagcagtaa |
24493319 |
T |
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| Q |
201 |
tggaggtgaggtttgggggttttgatgggagaaaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcggtctaga |
300 |
Q |
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| T |
24493318 |
tggaggtgaggtttgggggttttgatgggagaaaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcggtctaga |
24493219 |
T |
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| Q |
301 |
caaatgtaagagtgatattgtgtagaataaccaaggaaaaca |
342 |
Q |
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| T |
24493218 |
caaatataagagtgatattgtgtagaataaccaaggaaaaca |
24493177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 92883 - 92542
Alignment:
| Q |
1 |
tccaatggtggtgtggtttgtgatgaggatgtaagcgtgggtgaaggtgatggttgaatgctatttgtgtttgaaggagtgggttgggttgatggaggtg |
100 |
Q |
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| T |
92883 |
tccaatggtggtgtggtttgtgatgaggatgtaagcgtgagtgaaggtgatggttgaatgctatttgtgtttgaaggagtgggtttggttgatggaggtg |
92784 |
T |
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| Q |
101 |
tggttgaattatggattatggtttctgaggttctaggctgatgtgggtgggccaagatattagggagtgggagccacggatgttgggaagtgggcagtaa |
200 |
Q |
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| T |
92783 |
tggttgaattatggattatggtttctgaggttctaggctgatgtgggtgggttaagatattagggagtgggagccacggatgttggggagtgggcagtaa |
92684 |
T |
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| Q |
201 |
tggaggtgaggtttgggggttttgatgggagaaaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcggtctaga |
300 |
Q |
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| T |
92683 |
tggaggtgaggtttgggggttttgatgggagaaaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcgatctaga |
92584 |
T |
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| Q |
301 |
caaatgtaagagtgatattgtgtagaataaccaaggaaaaca |
342 |
Q |
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| T |
92583 |
caaatgtaagagtgatattgtgtagaataaccaagtaaaaca |
92542 |
T |
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