View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6099_low_1 (Length: 997)
Name: NF6099_low_1
Description: NF6099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6099_low_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 759; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 759; E-Value: 0
Query Start/End: Original strand, 86 - 986
Target Start/End: Original strand, 33646770 - 33647670
Alignment:
| Q |
86 |
ctaaggtttatgtttatttttagaattattgnnnnnnnctgacaagatttttagaattattgttgggcataaacaaatatattatacatttaaaaattaa |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||| |
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|
| T |
33646770 |
ctaaggtttatgtttatttttagaattattgtttttttctgacaagattttttgaattattgttgtgcataaacaaatatattgtacatttaaaaattaa |
33646869 |
T |
|
| Q |
186 |
accaatacttgttgcaatattttannnnnnnagaaacattgttgcaaatttagcagaatctgtctcttgttatttccctatccgatccctttctgtttat |
285 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
33646870 |
accaatacttgttgcaatattttatttttttagaaacattgttgcaaatttagcagaatctgtctcttgttatttccctatctgatccctttctgtttat |
33646969 |
T |
|
| Q |
286 |
tgttgattaaactgaaatcttttaaagaaagttttctatgctttaaatatgtagaaatctctctggtttagtatcatattaaaacacattttctcttttg |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33646970 |
tgttgattaaactgaaatcttttaaagaaagttttctatgctttaaatatgtagaaatctctctggtttagtatcatattaaaacacattttctcttttg |
33647069 |
T |
|
| Q |
386 |
aatttgcagattctgtattgtaataatagagaagaagataaactaagagtgataaaacaaaagtcatgtgcaacggctcgaatagaaaaccttgtcaaac |
485 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
33647070 |
attttgcagattctgtattgtaataatagagaagaagataaactaagagtgataaaacaaaagtcatgtgcaacggttcgaatagaaaaccttgtcaaac |
33647169 |
T |
|
| Q |
486 |
tggtttgattagggagaatgaatgtgaaagacaagaagaacttcatcataagatttcacctttgcttgagttttcagccaaagatgatgtaatggcgttc |
585 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33647170 |
tggtttgataagggaaaatgaatgtgaaagacaagaagaacatcatcataagatttcagctttgcttgagttttcagccaaagatgatgtaatggcgttc |
33647269 |
T |
|
| Q |
586 |
acagctgctgttgaaaaagatgatcatgatgttgatgaagtagggttatggtatggaaggaaggttggatcaaaggaaatgggatatgaagagaggacac |
685 |
Q |
| |
|
|||| ||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33647270 |
acagatgcagttgagaaagatgatcataatgttgatgaagtagggttatggtatggaaggaaggttggatcaaaggaaatgggatatgaagagaggacac |
33647369 |
T |
|
| Q |
686 |
ctcttatggtaggtgctttatatggaagcaagggtgtgttgtcttatattctcggaaccggtcgtgttgatgttaaccgagtgtatggctcagatagggc |
785 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
33647370 |
ctcttatggtagctgctttatatggaagcaagggtgtgttgtcttatattctcggaaccggtcgtgttgatgttaaccgagtgtgtggctcagatagggc |
33647469 |
T |
|
| Q |
786 |
taccgctcttcattgtgctgtttctggttgttctgctgcttctgccgaggttgtcaagcttttgcttgatgtatctgcagatgttagttccgctgatgca |
885 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33647470 |
taccgctcttcgttgtgctgtttctggttgttctgctgcttctgccgaggttgtcaaacttctgcttgatgcatctgcagatgttagttccgctgatgca |
33647569 |
T |
|
| Q |
886 |
aacggtaaccggtgcagcgacttggttgtctcggtttctaatagtctctacggttcaaggaagaggatactacaaggcatactagaaggggtagatgatg |
985 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33647570 |
tatcgtaaccggtgcagcaacttggttgtctcggtttctaatagtctctacggttcaaggaagaggatactacaagggatactagaaggggtagatgatg |
33647669 |
T |
|
| Q |
986 |
t |
986 |
Q |
| |
|
| |
|
|
| T |
33647670 |
t |
33647670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 33646631 - 33646718
Alignment:
| Q |
1 |
gttttgaattatttgtattagctttctctttcactctgaaagatgtacaggttgtttttgctgtttggctaataaggttgtataacta |
88 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33646631 |
gttttgaattatttgtattagctttctctttcactctgaaagatgtacaggttgtttttgctgtttggctaataaggttgtataacta |
33646718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 134 - 986
Target Start/End: Original strand, 25811640 - 25812488
Alignment:
| Q |
134 |
ttttagaattattgttgggcataaacaaatatattatacatttaaaaattaaaccaatacttgttgcaatattttannnnnnnagaaacattgttgcaaa |
233 |
Q |
| |
|
|||||||||||| |||| ||||||||||| |||||| || ||||||||||||||||||||||||||| || |||| || ||||||||||||| |
|
|
| T |
25811640 |
ttttagaattatggttgtgcataaacaaaaatattaaacttttaaaaattaaaccaatacttgttgctatgtttttttttt---gagacattgttgcaaa |
25811736 |
T |
|
| Q |
234 |
t----------ttagcagaatctgtctcttgttatttccctatccgatccctttctgtttattgttga-ttaaactgaaatcttttaaagaaagttttct |
322 |
Q |
| |
|
| |||||||||| |||||| | ||| || |||||| ||| | |||||||||||||| | |||||||||||| |||||| | || |||||| |
|
|
| T |
25811737 |
taataacaaatttagcagaatttgtctccttttaattgcctatcagattc--ttctgtttattgtttaattaaactgaaattttttaagggaa-ttttct |
25811833 |
T |
|
| Q |
323 |
atgctttaaatatgtagaaatctctctggtttagtatcatattaaaacacattttctcttttgaatttgcagattctgtattgtaataatagagaagaag |
422 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||| |||||||||||| || ||||||||||||| |||||||||||||||| || | | ||| |
|
|
| T |
25811834 |
atgctttaaatatgtagaattctctcttgtttagcatcatattaaaaaacgttttctcttttgattttgcagattctgtata--------agggga-aag |
25811924 |
T |
|
| Q |
423 |
ataaactaagagtgataaaacaaaa-gtcatgtgcaacggctcgaatagaaaaccttgtcaaactggtttgattagggagaatgaatgtgaaagacaaga |
521 |
Q |
| |
|
||||| || || |||||| |||| ||||||| |||||| ||||||||||||||||||||||||||||||||| ||| ||||||| || ||||||| | |
|
|
| T |
25811925 |
ctaaacaaactgtaataaaataaaaagtcatgttcaacggtgcgaatagaaaaccttgtcaaactggtttgattaaggaaaatgaatatggaagacaata |
25812024 |
T |
|
| Q |
522 |
agaacttcatcataagatttcacctttgcttgagttttcagccaaagatgatgtaatggcgttcacagctgctgttgaaaaagatgatcatgatgttgat |
621 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||| ||||||| |||||||||||||| || ||||| || ||| |
|
|
| T |
25812025 |
agaacttcatcataagatttcggctttgcttgagttttcagccaaagatgacgtattggcattcacagatgctgttgaaaaaggcgaacatgaagtcgat |
25812124 |
T |
|
| Q |
622 |
gaagtagggttatggtatggaaggaaggttggatcaaaggaaatgggatatgaagagaggacacctcttatggtaggtgctttatatggaagcaagggtg |
721 |
Q |
| |
|
|| ||||| |||||||||||||| | ||||||||| ||||| |||||||||||||||||||| |||||||||| | ||| |||| |||||||||||||| |
|
|
| T |
25812125 |
gaggtaggattatggtatggaagaagggttggatcgaaggatatgggatatgaagagaggacggctcttatggttgctgccttatttggaagcaagggtg |
25812224 |
T |
|
| Q |
722 |
tgttgtcttatattctcggaaccggtcgtgttgatgttaaccgagtgtatggctcagatagggctaccgctcttcattgtgctgtttctggttgttctgc |
821 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
25812225 |
tgttgtcttatattctcggaaccagtcgtgttgatgtcaaccgagtgtgcggctcagatagggctaccgctcttcgttgtgctgtttctggatgttctgc |
25812324 |
T |
|
| Q |
822 |
tgcttctgccgaggttgtcaagcttttgcttgatgtatctgcagatgttagttccgctgatgcaaacggtaaccggtgcagcgacttggttgtctcggtt |
921 |
Q |
| |
|
||||||||| || ||| |||| |||| |||||||| ||||||||||||||||||| ||||| || | ||| | ||||||||||||| |||||||||| |
|
|
| T |
25812325 |
tgcttctgctgaagttatcaacctttcgcttgatgcatctgcagatgttagttccattgatgtgaatgataa-cagtgcagcgacttgattgtctcggtg |
25812423 |
T |
|
| Q |
922 |
tctaatagtctctacggttcaaggaagaggatactacaaggcatactagaaggggtagatgatgt |
986 |
Q |
| |
|
|||| |||| | | ||||||||||||||||||||||| | |||||||||||| ||||||||||| |
|
|
| T |
25812424 |
tctagtagtatattcggttcaaggaagaggatactacgatccatactagaaggcgtagatgatgt |
25812488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 8e-70
Query Start/End: Original strand, 257 - 571
Target Start/End: Original strand, 25817487 - 25817792
Alignment:
| Q |
257 |
atttccctatccgatccctttctgtttattgttgattaaactgaaatcttttaaagaaagttttctatgctttaaatatgtagaaatctctctggtttag |
356 |
Q |
| |
|
||||||||||| ||| |||||| |||||||||||| |||||||||||||||||| || | |||||||||||| | ||||||| || |||||||||||| | |
|
|
| T |
25817487 |
atttccctatctgattcctttcagtttattgttgaataaactgaaatcttttaa-gagaattttctatgctt-atatatgtaaaattctctctggtttgg |
25817584 |
T |
|
| Q |
357 |
tatcatattaaaacacattttctcttttgaatttgcagattctgtattgtaataatagagaagaagataaactaagagtgataaaacaaaagtcatgtgc |
456 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||| |||||||| |||||||||||| ||||| ||| || | |||||||| ||||||||||| |
|
|
| T |
25817585 |
tatcatattaaaacacgttttctcttttgattttgcaaattctgta---taataatagagaggaagacaaa-aaaaactgataaaatcaaagtcatgtgt |
25817680 |
T |
|
| Q |
457 |
aacggctcgaatagaaaaccttgtcaaactggtttgattagggagaatgaatgtgaaagacaagaagaacttcatcataagatttcacctttgcttgagt |
556 |
Q |
| |
|
||| | ||||| ||||||||||||||| | ||||||||||||| ||||||| || || || ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
25817681 |
aacagtgcgaatggaaaaccttgtcaaattagtttgattagggaaaatgaatatggaacac---aagaacttcatcataagatttcagctttgcttgagt |
25817777 |
T |
|
| Q |
557 |
tttcagccaaagatg |
571 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
25817778 |
tttcagccaaagatg |
25817792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 613 - 941
Target Start/End: Original strand, 25817789 - 25818117
Alignment:
| Q |
613 |
gatgttgatgaagtagggttatggtatggaaggaaggttggatcaaaggaaatgggatatgaagagaggacacctcttatggtaggtgctttatatggaa |
712 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||| ||||||||||||||||| | |||||||| ||||| ||||||||| | | ||| || | ||||| |
|
|
| T |
25817789 |
gatgttgatgaagtaggattgtggtatggaaggaagattggatcaaaggaaatgagttatgaagaaaggacccctcttatgattgctgccttgtttggaa |
25817888 |
T |
|
| Q |
713 |
gcaagggtgtgttgtcttatattctcggaaccggtcgtgttgatgttaaccgagtgtatggctcagatagggctaccgctcttcattgtgctgtttctgg |
812 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||| |||| | ||| ||||| |||| ||| |||||||||| | ||||| |||| |
|
|
| T |
25817889 |
gcaagggtgtgttgtcttatattcttggaaccggtcgtgtcaatgttagccgaccttgtggttcagacaggggtacagctcttcatttttctgttactgg |
25817988 |
T |
|
| Q |
813 |
ttgttctgctgcttctgccgaggttgtcaagcttttgcttgatgtatctgcagatgttagttccgctgatgcaaacggtaaccggtgcagcgacttggtt |
912 |
Q |
| |
|
|||||||||||||||||||||| || | ||||||||| |||||| |||||||||| |||| | ||||| || | ||| |||| | ||||||| || |
|
|
| T |
25817989 |
ttgttctgctgcttctgccgagattattaagcttttggttgatgcttctgcagatggtagtgttgttgatgagaatgacaactggtgtaacgacttgatt |
25818088 |
T |
|
| Q |
913 |
gtctcggtttctaatagtctctacggttc |
941 |
Q |
| |
|
|||||||| ||||||||| ||| |||||| |
|
|
| T |
25818089 |
gtctcggtgtctaatagtatctccggttc |
25818117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 612 - 892
Target Start/End: Original strand, 30121727 - 30122007
Alignment:
| Q |
612 |
tgatgttgatgaagtagggttatggtatggaaggaaggttggatcaaaggaaatgggatatgaagagaggacacctcttatggtaggtgctttatatgga |
711 |
Q |
| |
|
||||||||||| || || || |||||||||||||| ||||| ||||| || | || |||||||||||||||||||| ||||| | |||| | |||||| |
|
|
| T |
30121727 |
tgatgttgatggggttggtttgtggtatggaaggaacgttggttcaaacaaatttggttatgaagagaggacacctctcatggttgctgctatgtatgga |
30121826 |
T |
|
| Q |
712 |
agcaagggtgtgttgtcttatattctcggaaccggtcgtgttgatgttaaccgagtgta-tggctcagatagggctaccgctcttcattgtgctgtttct |
810 |
Q |
| |
|
|| || ||| | | |||||||||| ||||| ||||| ||||||||||| || || || ||| || ||| | ||||| |||||||||||||| ||| | |
|
|
| T |
30121827 |
agtttggatgtatcggcttatattcttggaacaggtcgggttgatgttaatcg-gtctagtggatccgatggtgctactgctcttcattgtgcggttgtt |
30121925 |
T |
|
| Q |
811 |
ggttgttctgctgcttctgccgaggttgtcaagcttttgcttgatgtatctgcagatgttagttccgctgatgcaaacggta |
892 |
Q |
| |
|
|| ||||||||||||| || || || ||||| |||||||||||| ||| || |||| |||| | | |||||| ||||||| |
|
|
| T |
30121926 |
gggggttctgctgcttcccccaagattatcaagattttgcttgatgcatcggcggatgctagtgctgttgatgccaacggta |
30122007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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