View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6099_low_11 (Length: 361)
Name: NF6099_low_11
Description: NF6099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6099_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 40454685 - 40455013
Alignment:
| Q |
1 |
ttctcccaagagaaaatttacattgtataaatgatgtgacaaaattaaaggcagctatttttattcaagagcaatgtcatttctcaccattttaaagtta |
100 |
Q |
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| T |
40454685 |
ttctcccaagagaaaatttacattgtataaatgatgtgacaaaattaaaggcagctatttttattcgaaagcaatgtcatttctcaccattttaaagttt |
40454784 |
T |
|
| Q |
101 |
aaatcccaatctagaagtgtttggaaaatctcaattattatctctctttctatactataataataataatatggtgttgattatatcgtgcgggcatagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40454785 |
aaatcccaatctagaagtgtttggaaaatctcaattattatctctctttctatact---ataataataatatggtgttgattatatcgtgcgggcatagt |
40454881 |
T |
|
| Q |
201 |
tgttgatagtacacggtttttagtataaaaaataactatagaatatgatacaaataaaatatcacccgtttgttcagaagtgattattggtttaactttt |
300 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40454882 |
tgttga--------------tagtataaaaaataactatagaatatgatacaaataaaatatcacccgtttgttcagaagtgattattggtttaactttt |
40454967 |
T |
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| Q |
301 |
tggaggc--atatatgccttggtgcttgctttataaccgtccatct |
344 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40454968 |
tggaggcatatatatgccttggtgcttgctttataaccgtccatct |
40455013 |
T |
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