View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6099_low_12 (Length: 343)

Name: NF6099_low_12
Description: NF6099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6099_low_12
NF6099_low_12
[»] chr1 (10 HSPs)
chr1 (35-333)||(28231684-28231983)
chr1 (35-333)||(28239377-28239678)
chr1 (43-142)||(28326517-28326616)
chr1 (44-218)||(47569320-47569488)
chr1 (38-126)||(24621577-24621665)
chr1 (54-153)||(6326514-6326613)
chr1 (41-154)||(14508592-14508705)
chr1 (38-126)||(23787210-23787298)
chr1 (244-294)||(47569520-47569570)
chr1 (248-280)||(24621422-24621454)
[»] chr3 (1 HSPs)
chr3 (35-152)||(47924683-47924800)
[»] chr2 (2 HSPs)
chr2 (70-204)||(16375407-16375535)
chr2 (248-294)||(16375582-16375628)
[»] chr7 (1 HSPs)
chr7 (55-112)||(3698126-3698183)
[»] chr5 (1 HSPs)
chr5 (54-154)||(1718090-1718190)


Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 35 - 333
Target Start/End: Original strand, 28231684 - 28231983
Alignment:
Q  35 cctactttagttaccgaaggagaggtgagatctgctaaaagtgtagcagctatgatgataaaaggtggtgtcaaacctaacgttgctagttaccactcag 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28231684 cctactttagttaccgaaggagaggtgagatctgctaaaagtgtagcagctatgatgataaaaggtggtgtcaaacctaacgttgctagttaccactcag 28231783  T
Q  135 ttattgatggactatacaaaagccaaggtggatcaagaagtgttgtcatggataagattgcacaaaaggtcgaaacgttgctactttccaaacctagcat 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28231784 ttattgatggactatacaaaagccaaggtggatcaagaagtgttgtcatggataagattgcacaaaaggtcgaaacgttgctactttccaaacctagcat 28231883  T
Q  235 gcttactgttaattatgattgaacaac-aacaaactatttaaagtgggcgtgtttggtgaaacatcgaaagacaagttggttgcattctagttgatgatg 333  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28231884 gcttactgttaattatgattgaacaacaaacaaactatttaaagtgggcgtgtttggtgaaacatccaaagacaagttggttgcattctagttgatgatg 28231983  T

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Target: chr1; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 35 - 333
Target Start/End: Original strand, 28239377 - 28239678
Alignment:
Q  35 cctactttagttaccgaaggagaggtgagatctgctaaaagtgtagcagctatgatgataaaaggtggtgtcaaacctaacgttgctagttaccactcag 134  Q
    |||||||||||||||||| |||| |||| |||||||| |||||| |||||| |||||||||||||||||||||||||||| |||||| |||| | |||||    
T  28239377 cctactttagttaccgaacgagatgtgaaatctgctagaagtgtggcagctgtgatgataaaaggtggtgtcaaacctaatgttgcttgttatcgctcag 28239476  T
Q  135 ttattgatggactatacaaaagccaaggtggatcaagaagtgttgtcatggataagattgcacaaaaggtcgaaacgttgctactttccaaacctagcat 234  Q
    ||  |||||||||||||||| ||||||||||||||| |||     | ||| ||||||||| | |||||||| |||   |||||||||||  ||||  |      
T  28239477 tttatgatggactatacaaaggccaaggtggatcaaaaagcaaccttatgaataagattgaaaaaaaggtcaaaaaactgctactttccgtaccttacga 28239576  T
Q  235 gctta---ctgttaattatgattgaacaacaacaaactatttaaagtgggcgtgtttggtgaaacatcgaaagacaagttggttgcattctagttgatga 331  Q
    | |||    | ||  |||||||||||| ||||||||||||||| ||||||  |||||||| ||||||||||||||||||||||||  ||| |||||||||    
T  28239577 gtttaacggtatttcttatgattgaactacaacaaactatttatagtgggattgtttggtaaaacatcgaaagacaagttggttgtgttccagttgatga 28239676  T
Q  332 tg 333  Q
    ||    
T  28239677 tg 28239678  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 142
Target Start/End: Original strand, 28326517 - 28326616
Alignment:
Q  43 agttaccgaaggagaggtgagatctgctaaaagtgtagcagctatgatgataaaaggtggtgtcaaacctaacgttgctagttaccactcagttattgat 142  Q
    |||||||||| ||||||||| ||||||||||||||||| |||| | ||||||||||||||| ||| |||||| ||||||||||| ||||| |||||||||    
T  28326517 agttaccgaaagagaggtgaaatctgctaaaagtgtagtagctgtcatgataaaaggtggtctcagacctaatgttgctagttatcactcggttattgat 28326616  T

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Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 44 - 218
Target Start/End: Original strand, 47569320 - 47569488
Alignment:
Q  44 gttaccgaaggagaggtgagatctgctaaaagtgtagcagctatgatgataaaaggtggtgtcaaacctaacgttgctagttaccactcagttattgatg 143  Q
    |||||||||  |||||||| |||||||||| ||| ||| ||| |||||||||||||| ||||||||||||| | ||||||||| ||||| ||||||| |     
T  47569320 gttaccgaacaagaggtgaaatctgctaaatgtgcagctgctttgatgataaaaggtagtgtcaaacctaatgctgctagttatcactctgttattggta 47569419  T
Q  144 gactatacaaaagccaaggtggatcaagaagtgttgtcatggataagattgcacaaaaggtcgaaacgttgctac 218  Q
    |||||||      | |||  ||| ||||||||||||| ||| |||| |||||||||| ||| |||| ||||||||    
T  47569420 gactata------cgaagagggagcaagaagtgttgttatgaataacattgcacaaagggtggaaaagttgctac 47569488  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 24621665 - 24621577
Alignment:
Q  38 actttagttaccgaaggagaggtgagatctgctaaaagtgtagcagctatgatgataaaaggtggtgtcaaacctaacgttgctagtta 126  Q
    |||||||||||||||  |||||||| ||||| |||||||| |||| || |||||||||||| ||||||||||||||| |||||| ||||    
T  24621665 actttagttaccgaacaagaggtgaaatctgttaaaagtgcagcaactttgatgataaaagctggtgtcaaacctaatgttgcttgtta 24621577  T

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Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 153
Target Start/End: Complemental strand, 6326613 - 6326514
Alignment:
Q  54 gagaggtgagatctgctaaaagtgtagcagctatgatgataaaaggtggtgtcaaacctaacgttgctagttaccactcagttattgatggactatacaa 153  Q
    ||||||| | ||||||||||| || || |||| ||||||||||||| ||| |||||||||| ||||||||||| |||||||||  ||||||| |||||||    
T  6326613 gagaggtcaaatctgctaaaactgcagtagctgtgatgataaaaggcggtctcaaacctaatgttgctagttatcactcagttgctgatggaatatacaa 6326514  T

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Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 154
Target Start/End: Complemental strand, 14508705 - 14508592
Alignment:
Q  41 ttagttaccgaaggagaggtgagatctgctaaaagtgtagcagctatgatgataaaaggtggtgtcaaacctaacgttgctagttaccactcagttattg 140  Q
    |||||||| ||||||||||||| | |||||||||||  |   ||| | |||||||||||||||||||||||||  ||||||||||  ||||| || ||||    
T  14508705 ttagttactgaaggagaggtgaaagctgctaaaagtacaatcgctctaatgataaaaggtggtgtcaaacctattgttgctagttttcactcggtgattg 14508606  T
Q  141 atggactatacaaa 154  Q
    ||| ||||||||||    
T  14508605 atgaactatacaaa 14508592  T

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Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 126
Target Start/End: Original strand, 23787210 - 23787298
Alignment:
Q  38 actttagttaccgaaggagaggtgagatctgctaaaagtgtagcagctatgatgataaaaggtggtgtcaaacctaacgttgctagtta 126  Q
    |||||||||||||||  |||||||| ||||| |||||||| |||| || || ||||||||| ||||||||||||||| |||||| ||||    
T  23787210 actttagttaccgaacaagaggtgaaatctgttaaaagtgcagcaactttggtgataaaagctggtgtcaaacctaatgttgcttgtta 23787298  T

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Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 47569520 - 47569570
Alignment:
Q  244 taattatgattgaacaacaacaaactatttaaagtgggcgtgtttggtgaa 294  Q
    ||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  47569520 taaatatgattgaacaacaacaaactatttaaagtgggcttgtttggtgaa 47569570  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 280
Target Start/End: Complemental strand, 24621454 - 24621422
Alignment:
Q  248 tatgattgaacaacaacaaactatttaaagtgg 280  Q
    |||||||||||||||||||||||||||||||||    
T  24621454 tatgattgaacaacaacaaactatttaaagtgg 24621422  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 35 - 152
Target Start/End: Complemental strand, 47924800 - 47924683
Alignment:
Q  35 cctactttagttaccgaaggagaggtgagatctgctaaaagtgtagcagctatgatgataaaaggtggtgtcaaacctaacgttgctagttaccactcag 134  Q
    |||||||||||||| ||||||||||| | |  |||||||| |||||  ||| ||||| ||||| | |||||||||||||| ||||| ||||| |||||||    
T  47924800 cctactttagttactgaaggagaggttaaagatgctaaaactgtagtggctgtgatggtaaaatgcggtgtcaaacctaatgttgccagttatcactcag 47924701  T
Q  135 ttattgatggactataca 152  Q
    | ||||||  ||||||||    
T  47924700 tgattgatcaactataca 47924683  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 70 - 204
Target Start/End: Original strand, 16375407 - 16375535
Alignment:
Q  70 taaaagtgtagcagctatgatgataaaaggtggtgtcaaacctaacgttgctagttaccactcagttattgatggactatacaaaagccaaggtggatca 169  Q
    |||||||| ||||  | |||||||||||||||||||||||||||| | | ||||||| |||||  |||| ||| |||||||||      |||| ||||||    
T  16375407 taaaagtgcagcacatgtgatgataaaaggtggtgtcaaacctaatgcttctagttatcactctattatcgatagactataca------aagggggatca 16375500  T
Q  170 agaagtgttgtcatggataagattgcacaaaaggt 204  Q
    ||||||||||| |||  ||||||| ||||||||||    
T  16375501 agaagtgttgttatgattaagattacacaaaaggt 16375535  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 294
Target Start/End: Original strand, 16375582 - 16375628
Alignment:
Q  248 tatgattgaacaacaacaaactatttaaagtgggcgtgtttggtgaa 294  Q
    ||||||||||||| || ||||||||||||||| || |||||||||||    
T  16375582 tatgattgaacaataaaaaactatttaaagtgagcttgtttggtgaa 16375628  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 3698183 - 3698126
Alignment:
Q  55 agaggtgagatctgctaaaagtgtagcagctatgatgataaaaggtggtgtcaaacct 112  Q
    |||||||| ||||||||||| |||||||||||||| |||||||||| || ||||||||    
T  3698183 agaggtgaaatctgctaaaaatgtagcagctatgacgataaaaggttgtctcaaacct 3698126  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 154
Target Start/End: Original strand, 1718090 - 1718190
Alignment:
Q  54 gagaggtgagatctgctaaaagtgtagcagctatgatgataaaaggtggtgtcaaacctaacgttgctagttaccactcagttattgatggactatacaa 153  Q
    ||||||||| | |||||||||||  | | ||| | |||||||||||||||||||||||||  |||||| |||| ||||| || |||| || || ||||||    
T  1718090 gagaggtgaaagctgctaaaagtacaactgctcttatgataaaaggtggtgtcaaacctattgttgctggttatcactcggtgattggtgaaccatacaa 1718189  T
Q  154 a 154  Q
    |    
T  1718190 a 1718190  T

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