View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6099_low_13 (Length: 340)
Name: NF6099_low_13
Description: NF6099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6099_low_13 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 3 - 340
Target Start/End: Original strand, 22684545 - 22684882
Alignment:
| Q |
3 |
tttcatcagaagtgtaagtgcaatagagcaacgcacaaaggtagtaataatagtatggacaatacttaccaaaatatggaaaagagagggccacaaataa |
102 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22684545 |
tttcatcagaagtgtaagtgcaacagagcaacgcacaaaggtagtaataatagtatggacaatacttaccaaaatatggaaaagagagggccacaaataa |
22684644 |
T |
|
| Q |
103 |
acttgaaaacactaaagttgttctgataaaaagagacatagcataacatcttagcctaggagaagggacgacaagttcctctatgcttgatgcaacaggc |
202 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22684645 |
acttgaaaacactaaagttgttttaataaaaagagacatagcataacatcttagcctaggagaagggacgacaagttcctctatgcttgatgcaacaggc |
22684744 |
T |
|
| Q |
203 |
aataatattaaggcaatttttgccaaaggagtcacaacctataaataaaacaaaacacataaatttgttaaaatgtgtcatctatgtgataaaacatgaa |
302 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22684745 |
aataatattaaggcaaattttgccaaaggagtcacaacctataaataaaacaaaacacagaaatttgttaaaatgtgtcatctatgtgataaaacatgaa |
22684844 |
T |
|
| Q |
303 |
tttaaagtcaagaaaaaaggaacaaggagattaatttt |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22684845 |
tttaaagtcaagaaaaaaggaacaaggagattaatttt |
22684882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 29 - 309
Target Start/End: Original strand, 22695870 - 22696146
Alignment:
| Q |
29 |
agcaacgcacaaaggtagtaataatagtatggacaatacttaccaaaatatggaaaagagagggccacaaataaacttgaaaacactaaagttgttctga |
128 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| |
|
|
| T |
22695870 |
agcaatgcacaaaggtagtaataatggtatg-acaaaacttaccaaaatatggaaaagagagggccacaactaaacttgaaaccactaaagctgttctga |
22695968 |
T |
|
| Q |
129 |
taaaaagagacatagcataacatcttagcctaggagaagggacgacaagttcctctatgcttgatgcaacaggcaataatattaaggcaatttttgccaa |
228 |
Q |
| |
|
| | || |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||| |||||||| |
|
|
| T |
22695969 |
tgagaatagacataggataacatcttagcctaggagaagggac---aagttcctctatgcttgatgcaataggcaataatgttaaggcatattttgccag |
22696065 |
T |
|
| Q |
229 |
aggagtcacaacctataaataaaacaaaacacataaatttgttaaaatgtgtcatctatgtgataaaacatgaatttaaag |
309 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22696066 |
aggagtcacaacctatatgtaaaataaaacacagaaatttgttaaaatttgtcatctatgtgataaaacatgaatttaaag |
22696146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University