View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6099_low_17 (Length: 319)

Name: NF6099_low_17
Description: NF6099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6099_low_17
NF6099_low_17
[»] chr5 (6 HSPs)
chr5 (12-319)||(38604952-38605259)
chr5 (12-217)||(40180450-40180652)
chr5 (50-200)||(38605684-38605831)
chr5 (49-180)||(40181199-40181330)
chr5 (229-317)||(38605860-38605948)
chr5 (229-309)||(40180712-40180792)
[»] chr6 (3 HSPs)
chr6 (14-182)||(410926-411095)
chr6 (137-192)||(9161361-9161416)
chr6 (272-317)||(410782-410827)
[»] chr8 (7 HSPs)
chr8 (14-317)||(44460157-44460457)
chr8 (14-317)||(44467690-44467990)
chr8 (16-258)||(34502221-34502460)
chr8 (47-200)||(44459572-44459722)
chr8 (47-200)||(44467105-44467255)
chr8 (273-317)||(44459446-44459490)
chr8 (273-317)||(44466979-44467023)
[»] chr1 (1 HSPs)
chr1 (14-317)||(46359027-46359327)


Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 12 - 319
Target Start/End: Original strand, 38604952 - 38605259
Alignment:
Q  12 catcatcaggaaggagggtttctggatgaagcacaatcttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtcttaaaaag 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38604952 catcatcaggaaggagggtttctggatgaagcacaatcttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtcttaaaaag 38605051  T
Q  112 agcttccagtgtaaagatatatgaatcttgattaggcacacactgaaagacctcaaatttatgaaaaacttggagtgcagtcttaccttggtcccacaca 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38605052 agcttccagtgtaaagatatatgaatcttgattaggcacacactgaaagacctcaaatttatgaaaaacttggagtgcagtcttaccttggtcccacaca 38605151  T
Q  212 tatccaaatgaatctaggagttgattgagaatctgggtgttaagaagaccagtctcagaatggccaatatgtttaagcaagtcccacagaaaaagtatgt 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38605152 tatccaaatgaatctaggagttgattgagaatctgggtgttaagaagaccagtctcggaatggccaatatgtttaagcaagtcccacagaaaaagtatgt 38605251  T
Q  312 cattctgc 319  Q
    ||||||||    
T  38605252 cattctgc 38605259  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 40180450 - 40180652
Alignment:
Q  12 catcatcaggaaggagggtttctggatgaagcacaatcttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtcttaaaaag 111  Q
    |||||||||||||||| || ||||| |||||||| ||||||||||| || ||||||||||||||||| | ||||| |||| ||  | | | |  | |||     
T  40180450 catcatcaggaaggagagtatctggttgaagcaccatcttttgacatatggaagcggcttgctggagtacatcagtactgtaatctat-gcc--acaaat 40180546  T
Q  112 agcttccagtgtaaagatatatgaatcttgattaggcacacactgaaagacctcaaatttatgaaaaacttggagtgcagtcttaccttggtcccacaca 211  Q
    ||||| ||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||| |  ||||||| ||| |||| |||||| | |    
T  40180547 agcttgcagtgtaaagatatatgtatcttgatttggcacacattgaaagacctcaaatttatgaaaaacatcaagtgcagccttccctttgtcccaaata 40180646  T
Q  212 tatcca 217  Q
    ||||||    
T  40180647 tatcca 40180652  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 50 - 200
Target Start/End: Original strand, 38605684 - 38605831
Alignment:
Q  50 ttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtcttaaaaagagcttccagtgtaaagatatatgaatcttgattaggca 149  Q
    |||||||||||||||| |||||| ||||  ||||||||||| ||  |||| |||   ||||||||||  |||||||||  |||||  |||||||| ||||    
T  38605684 ttttgacagatagaagaggcttggtggatgatatcagcactacacgttgtggtc---aaaagagcttgaagtgtaaagtaatatgtgtcttgatttggca 38605780  T
Q  150 cacactgaaagacctcaaatttatgaaaaacttggagtgcagtcttacctt 200  Q
    |||| ||||||||||||||  ||||||||||||  ||||||| ||| ||||    
T  38605781 cacattgaaagacctcaaacatatgaaaaacttcaagtgcagacttgcctt 38605831  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 180
Target Start/End: Original strand, 40181199 - 40181330
Alignment:
Q  49 cttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtcttaaaaagagcttccagtgtaaagatatatgaatcttgattaggc 148  Q
    ||||||| |||||||  | ||||| |||| |||||||||||| || |||||  || | |||||||||| ||||||| ||  ||||| ||||||||| |||    
T  40181199 cttttgatagatagactctgcttggtggatcatatcagcactacaccttgtgctcctcaaaagagcttgcagtgtatagtaatatgtatcttgatttggc 40181298  T
Q  149 acacactgaaagacctcaaatttatgaaaaac 180  Q
    ||||| ||||| || ||||| |||||||||||    
T  40181299 acacattgaaatacgtcaaaattatgaaaaac 40181330  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 229 - 317
Target Start/End: Original strand, 38605860 - 38605948
Alignment:
Q  229 gagttgattgagaatctgggtgttaagaagaccagtctcagaatggccaatatgtttaagcaagtcccacagaaaaagtatgtcattct 317  Q
    ||| |||||||||||  | | ||||||||| || || | | ||||||||||||  |||||||| |||||||||||||||||||||||||    
T  38605860 gaggtgattgagaatgggtgggttaagaaggccggtttgataatggccaatattcttaagcaaatcccacagaaaaagtatgtcattct 38605948  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 229 - 309
Target Start/End: Original strand, 40180712 - 40180792
Alignment:
Q  229 gagttgattgagaatctgggtgttaagaagaccagtctcagaatggccaatatgtttaagcaagtcccacagaaaaagtat 309  Q
    |||||||||||||||| | |||||||||| ||| |||| | | ||||||||||| || ||||||| ||||||| |||||||    
T  40180712 gagttgattgagaatccgagtgttaagaataccggtctgatagtggccaatatgcttcagcaagttccacagataaagtat 40180792  T

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Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 14 - 182
Target Start/End: Complemental strand, 411095 - 410926
Alignment:
Q  14 tcatcaggaaggagggtttctggatgaagcacaatcttttgacagatagaagcggcttgctggagcatatca-gcactgcaacttgttgtcttaaaaaga 112  Q
    ||||| |||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||| | | |||||||||||||||  ||||||||    
T  411095 tcatcgggaaggagggtttctggatgaagcagcatcttttgacagatagaagccgcttgctggagcatataaagtactgcaacttgttgttctaaaaaga 410996  T
Q  113 gcttccagtgtaaagatatatgaatcttgattaggcacacactgaaagacctcaaatttatgaaaaactt 182  Q
    ||||||| ||||||||| |||| ||||||||| || ||||| ||||| ||||||||||||||||||||||    
T  410995 gcttccaatgtaaagatgtatgtatcttgatttggaacacattgaaatacctcaaatttatgaaaaactt 410926  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 9161416 - 9161361
Alignment:
Q  137 tcttgattaggcacacactgaaagacctcaaatttatgaaaaacttggagtgcagt 192  Q
    |||||||| || ||||| |||||||||||||||| |||||||||||  ||||||||    
T  9161416 tcttgattcggaacacattgaaagacctcaaattaatgaaaaacttcaagtgcagt 9161361  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 410827 - 410782
Alignment:
Q  272 tggccaatatgtttaagcaagtcccacagaaaaagtatgtcattct 317  Q
    ||||||||||| ||||||||||| |||| ||||| |||||||||||    
T  410827 tggccaatatgcttaagcaagtctcacataaaaattatgtcattct 410782  T

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Target: chr8 (Bit Score: 94; Significance: 7e-46; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 14 - 317
Target Start/End: Complemental strand, 44460457 - 44460157
Alignment:
Q  14 tcatcaggaaggagggtttctggatgaagcacaatcttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtcttaaaaagag 113  Q
    ||||||||||||| |||||||||||||||||  ||||||||||| |||||||||||||| |||| ||||||||   | ||  |||| |||   |||| ||    
T  44460457 tcatcaggaaggatggtttctggatgaagcagcatcttttgacacatagaagcggcttggtggatcatatcagtggtacactttgtggtc---aaaaaag 44460361  T
Q  114 cttccagtgtaaagatatatgaatcttgattaggcacacactgaaagacctcaaatttatgaaaaacttggagtgcagtcttaccttggtcccacacata 213  Q
    ||| ||| |||  |||||||| ||||||||| ||||| || |||||  ||||||||||||||||||||| |||| | ||||| ||||||  | |||   |    
T  44460360 cttgcagcgtatggatatatgtatcttgattcggcacgcattgaaatgcctcaaatttatgaaaaacttcgagtccggtctttccttggcacaacatcaa 44460261  T
Q  214 tccaaatgaatctaggagttgattgagaatctgggtgttaagaagaccagtctcagaatggccaatatgtttaagcaagtcccacagaaaaagtatgtca 313  Q
    |||||| || | |||||||||||||||||||  |||| |||||||  |||||| | | ||||||||||| |||||||| ||||||||||||| ||||||     
T  44460260 tccaaaggagtgtaggagttgattgagaatcctggtgctaagaaggtcagtctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgtcg 44460161  T
Q  314 ttct 317  Q
    ||||    
T  44460160 ttct 44460157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 14 - 317
Target Start/End: Complemental strand, 44467990 - 44467690
Alignment:
Q  14 tcatcaggaaggagggtttctggatgaagcacaatcttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtcttaaaaagag 113  Q
    ||||||||||||| |||||||||||||||||  ||||||||||| |||||||||||||| |||| ||||||||   | ||  |||| |||   |||| ||    
T  44467990 tcatcaggaaggatggtttctggatgaagcagcatcttttgacacatagaagcggcttggtggatcatatcagtggtacactttgtggtc---aaaaaag 44467894  T
Q  114 cttccagtgtaaagatatatgaatcttgattaggcacacactgaaagacctcaaatttatgaaaaacttggagtgcagtcttaccttggtcccacacata 213  Q
    ||| ||| |||  |||||||| ||||||||| ||||| || |||||  ||||||||||||||||||||| |||| | ||||| ||||||  | |||   |    
T  44467893 cttgcagcgtatggatatatgtatcttgattcggcacgcattgaaatgcctcaaatttatgaaaaacttcgagtccggtctttccttggcacaacatcaa 44467794  T
Q  214 tccaaatgaatctaggagttgattgagaatctgggtgttaagaagaccagtctcagaatggccaatatgtttaagcaagtcccacagaaaaagtatgtca 313  Q
    |||||| || | |||||||||||||||||||  |||| |||||||  |||||| | | ||||||||||| |||||||| ||||||||||||| ||||||     
T  44467793 tccaaaggagtgtaggagttgattgagaatcctggtgctaagaaggtcagtctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgtcg 44467694  T
Q  314 ttct 317  Q
    ||||    
T  44467693 ttct 44467690  T

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Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 34502221 - 34502460
Alignment:
Q  16 atcaggaaggagggtttctggatgaagcacaatcttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtcttaaaaagagct 115  Q
    ||||||||||| |||||||||||||||||  |||||||||||||||||||||||||| |||  ||||||||   | || |||||  ||   |||||||||    
T  34502221 atcaggaaggacggtttctggatgaagcagcatcttttgacagatagaagcggcttggtgggtcatatcagtgatacatcttgtgatc---aaaagagct 34502317  T
Q  116 tccagtgtaaagatatatgaatcttgattaggcacacactgaaagacctcaaatttatgaaaaacttggagtgcagtcttaccttggtcccacacatatc 215  Q
    | |||||||||| | |||| |||| |||| |||||||| |||||  ||||||||||||||||||||| | ||||| |||| ||||||||| ||| | ||     
T  34502318 ttcagtgtaaaggtgtatgtatctcgattcggcacacattgaaatgcctcaaatttatgaaaaacttcgggtgcaatctttccttggtccaacataaatg 34502417  T
Q  216 caaatgaatctaggagttgattgagaatctgggtgttaagaag 258  Q
    |||  |||| ||||||||||| ||||||| | |||||||||||    
T  34502418 caagggaatgtaggagttgatagagaatccgtgtgttaagaag 34502460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 200
Target Start/End: Complemental strand, 44459722 - 44459572
Alignment:
Q  47 atcttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtcttaaaaagagcttccagtgtaaagatatatgaatcttgattag 146  Q
    ||||| |||||||||||||| ||||| |||| ||||| || ||| ||  | || |||   |||||||||| ||| ||||||  ||||| ||| ||||| |    
T  44459722 atcttctgacagatagaagctgcttgatggatcatatgagtactacaggtcgtggtc---aaaagagcttgcagagtaaagtaatatgtatcgtgatttg 44459626  T
Q  147 gcacacactgaaagacctcaaatttatgaaaaacttggagtgcagtcttacctt 200  Q
    |||||||||||||| |||||||  ||||||||||||  |||||||  |||||||    
T  44459625 gcacacactgaaaggcctcaaacatatgaaaaacttcaagtgcagatttacctt 44459572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 200
Target Start/End: Complemental strand, 44467255 - 44467105
Alignment:
Q  47 atcttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtcttaaaaagagcttccagtgtaaagatatatgaatcttgattag 146  Q
    ||||| |||||||||||||| ||||| |||| ||||| || ||| ||  | || |||   |||||||||| ||| ||||||  ||||| ||| ||||| |    
T  44467255 atcttctgacagatagaagctgcttgatggatcatatgagtactacaggtcgtggtc---aaaagagcttgcagagtaaagtaatatgtatcgtgatttg 44467159  T
Q  147 gcacacactgaaagacctcaaatttatgaaaaacttggagtgcagtcttacctt 200  Q
    |||||||||||||| |||||||  ||||||||||||  |||||||  |||||||    
T  44467158 gcacacactgaaaggcctcaaacatatgaaaaacttcaagtgcagatttacctt 44467105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 44459490 - 44459446
Alignment:
Q  273 ggccaatatgtttaagcaagtcccacagaaaaagtatgtcattct 317  Q
    |||||||| | ||||||||||||||||||||||||||||| ||||    
T  44459490 ggccaatacgcttaagcaagtcccacagaaaaagtatgtcgttct 44459446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 44467023 - 44466979
Alignment:
Q  273 ggccaatatgtttaagcaagtcccacagaaaaagtatgtcattct 317  Q
    |||||||| | ||||||||||||||||||||||||||||| ||||    
T  44467023 ggccaatacgcttaagcaagtcccacagaaaaagtatgtcgttct 44466979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 14 - 317
Target Start/End: Complemental strand, 46359327 - 46359027
Alignment:
Q  14 tcatcaggaaggagggtttctggatgaagcacaatcttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtcttaaaaagag 113  Q
    ||||||||||||| |||||||||||||||||  ||||||||||| |||||||||||||| |||| ||||||||   | ||  |||| |||   |||| ||    
T  46359327 tcatcaggaaggatggtttctggatgaagcagcatcttttgacacatagaagcggcttggtggatcatatcagtggtacactttgtggtc---aaaaaag 46359231  T
Q  114 cttccagtgtaaagatatatgaatcttgattaggcacacactgaaagacctcaaatttatgaaaaacttggagtgcagtcttaccttggtcccacacata 213  Q
    ||| ||| |||  |||||||| ||||||||| ||||| || |||||  ||||||||||||||||||||| |||| | ||||| ||||||  | |||   |    
T  46359230 cttgcagcgtatggatatatgtatcttgattcggcacgcattgaaatgcctcaaatttatgaaaaacttcgagtccggtctttccttggcacaacatcaa 46359131  T
Q  214 tccaaatgaatctaggagttgattgagaatctgggtgttaagaagaccagtctcagaatggccaatatgtttaagcaagtcccacagaaaaagtatgtca 313  Q
    |||||| || | |||||||||||||||||||  |||| |||||||  |||||| | | ||||||||||| |||||||| ||||||||||||| ||||||     
T  46359130 tccaaaggagtgtaggagttgattgagaatcctggtgctaagaaggtcagtctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgtcg 46359031  T
Q  314 ttct 317  Q
    ||||    
T  46359030 ttct 46359027  T

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