View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6099_low_23 (Length: 277)
Name: NF6099_low_23
Description: NF6099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6099_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 15873939 - 15874190
Alignment:
| Q |
11 |
atgaaagggcttaggattttccaatttgactattaccattccaagtcgtttggattcacccatatcaaaagaattgttaattaaaaattccaaatcaata |
110 |
Q |
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| T |
15873939 |
atgaaagggcttaggattttccaatttgactattaccattccaagtcgtttggattcacccatatcaaaagaattgttaattaaaaattccaaatcaata |
15874038 |
T |
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| Q |
111 |
cccatttcttcgcatagaatctcaagcattattctt-ggaagttgattctccaacaataaagtatctctccatatgtgcatcagttggtcaaacttaagg |
209 |
Q |
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| T |
15874039 |
cccatttcttcgcatagaatctcaagcattattcttgggaagttgattctccaacaataaagtatctctccatatgtgcatcagttggtcaaacttaagg |
15874138 |
T |
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| Q |
210 |
tttagggcatccgggcattggtcatcaacatttcccataaaatgtagcaaag |
261 |
Q |
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| T |
15874139 |
tttagggcattcgggcattggtcatcaacatttcccataaagtgtagcaaag |
15874190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 15900129 - 15899879
Alignment:
| Q |
11 |
atgaaagggcttaggattttccaatttgactattaccattccaagtcgtttggattcacccatatcaaaagaattgttaattaaaaattccaaatcaata |
110 |
Q |
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| T |
15900129 |
atgaaagggcttatgattttccaattggagcattgccattccaagtcgtttgcatgcacccattgcaaaagaattgttaattaaaaaatccaaatcaaca |
15900030 |
T |
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| Q |
111 |
cccatttcttcgcatagaatctcaagcattattcttggaagttgattctccaacaataaagtatctctccatatgtgcatcagttggtcaaacttaaggt |
210 |
Q |
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| T |
15900029 |
ctcgtttcttcgcatagaatctcaagcattatttttggaagttgattctccaacaaaaaagtatctctccatatgtgcatcagttggtcaaacttaaggt |
15899930 |
T |
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| Q |
211 |
ttagggcatccgggcattggtcatcaacatttcccataaaatgtagcaaag |
261 |
Q |
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| T |
15899929 |
ttagggcatccgggcattggtcatcaacattttccataaagtgtagcaaag |
15899879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 9 - 261
Target Start/End: Complemental strand, 15921159 - 15920907
Alignment:
| Q |
9 |
agatgaaagggcttaggattttccaatttgactattaccattccaagtcgtttggattcacccatatcaaaagaattgttaattaaaaattccaaatcaa |
108 |
Q |
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| T |
15921159 |
agatgacagggcttagtattttccaattgaaccattaccattccgcatcgtttacctcgacccaaattatcataattgttaattaaaaatcccaaatcat |
15921060 |
T |
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| Q |
109 |
tacccatttcttcgcatagaatctcaagcattattcttggaagttgattctccaacaataaagtatctctccatatgtgcatcagttggtcaaacttaag |
208 |
Q |
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| T |
15921059 |
aacccgcttctttgcatagaatctcaagcattttgtttggaagctggttctctaacaaattagtatctctccatatgtgcatcagttggtcaaacttaag |
15920960 |
T |
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| Q |
209 |
gtttagggcatccgggcattggtcatcaacatttcccataaaatgtagcaaag |
261 |
Q |
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| T |
15920959 |
gtttagggcatccgggcattggtcatcaacattttccataaagtgtagcaaag |
15920907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 82 - 259
Target Start/End: Original strand, 14060426 - 14060603
Alignment:
| Q |
82 |
aattgttaattaaaaattccaaatcaatacccatttcttcgcatagaatctcaagcattattcttggaagttgattctccaacaataaagtatctctcca |
181 |
Q |
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| T |
14060426 |
aattgttaactaaaaagttcaaatcaatgcctctttcattgcatataatctcaagcatttggtatggaagttggttctctaacaacgaaacatctctcca |
14060525 |
T |
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| Q |
182 |
tatgtgcatcagttggtcaaacttaaggtttagggcatccgggcattggtcatcaacatttcccataaaatgtagcaa |
259 |
Q |
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| T |
14060526 |
tatatacatcaattggtcaaacttaagatttagcccttcgggatattggtcatcgacatttcccatgaaatgtagcaa |
14060603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 259
Target Start/End: Original strand, 14049119 - 14049232
Alignment:
| Q |
146 |
tggaagttgattctccaacaataaagtatctctccatatgtgcatcagttggtcaaacttaaggtttagggcatccgggcattggtcatcaacatttccc |
245 |
Q |
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||||||||| ||||||||||| | |||||||||||||| ||||| ||| ||||||||||| ||||| | || || |||||||||| |||||| || |
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| T |
14049119 |
tggaagttggttctccaacaacttaacatctctccatatgtacatcaattgatcaaacttaagatttagcccttcaggatattggtcatcgacattttcc |
14049218 |
T |
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| Q |
246 |
ataaaatgtagcaa |
259 |
Q |
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| T |
14049219 |
ataaaatgcagcaa |
14049232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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